Download all available metagenomes genbank files in batch

Maybe this is a naive question, but I am looking for the answer since days.

I would like to download in batch all the metagenome genbank files available to date. Any idea how could I do that?

python ncbi metagenome r linux

• 3,356 views • link

updated 4.4 years ago by Ram

• written 11.6 years ago by dago

1 answer

Looks like something similar has been asked before: GenBank Batch Download

Here is R package http://www.bioconductor.org/packages/release/bioc/manuals/genomes/man/genomes.pdf

Put "bioproject" as your db and look for metagenomes. Should work.

• 1 views • link

updated 4.4 years ago by Ram

• written 11.6 years ago by marina.v.yurieva

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