Hi there, I met a problem when annotate a nonframshift substitution but it was supposed to be frameshilt. Here is the example of data (test.avinput) …

<p>Hey, I am using annovar software to annotate my variants, it works well. HOwever, when I converted annotated variant file into txt file, some of …

<p>HI, I generated my own samples' variant or SNP calling table and plan to narrow down or filter these many of the variants using dbSNP. …

<p>When I run variants_reduction script of Annovar for the mouse variant file, it shows as follows, but this script should support for non-human variants according …

<p>I am trying to create a hyperlink. I have an example of </p> <pre><code>Chromosome chr15 Genomic Coords 70455115 -7042353 </code></pre> <p>So I put that into …

<p>Hi,</p> <p>why does this python script always give an index out of range error, when pairwise2 is supposed to output a 5 element tuple? e.g. …

<p>I'm using annovar to filter common variants using different database, in order to find rare variants. Then I pay special attention to the allele frequency …

<p>I used the ANNOVAR command line</p> <pre><code>annotate_variation.pl -downdb -buildver hg19 refGene humandb </code></pre> <p>to download hg19_refGene.txt from UCSC and I'll use this database to create …

<p>Hello, </p> <p>I try to do the diff analysis by DESeq on two samples coming from two different condition without replicate</p> <p>I run the script …

<p>Hello everybody ,exuse my horrible english.</p> <p>I m writing a perl script to know what is the effect of snp on a given gene, my …