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Bsmap methylation on Hadoop
Hello Everyone, Can someone give me some insights on how to do bsmap methylation extraction on human genome data using hadoop cluster??
bsmap methylation hadoop human genome
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updated by Devon Ryan Devon Ryan • written by shalini.ravishankar • shalini.ravishankar

1 answer

The simplest method would be to just run each chromosome (or a part thereof, depending on how many cores you have, how the data is stored, etc.) on a separate core somewhere on the cluster. This actually has nothing to do with hadoop other than the fact that the cluster is likely using it for file storage.

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written by Devon Ryan Devon Ryan
Yeah. You are correct but I am wondering is there a way to do this using Hadoop.
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written by shalini.ravishankar • shalini.ravishankar

If you want to write the code to do it, then pretty much anything is possible :)

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written by Devon Ryan Devon Ryan

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