Question: GEO datasets for the eqtl analysis
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Hello,

How can I extract all datasets from GEO relating to Alzheimer's samples from GEO for eqtl analysis ?

Thank you

ADD COMMENTlink 5.0 years ago P.NJ • 50
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Have you found datasets for which you have access to the SNP data (dbGaP data access) and that also have associated gene expression data? Just note that GEO does not have SNP data for human subjects (largely).

ADD REPLYlink 5.0 years ago
Sean Davis
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no I do not have access to dbGAP, I am using eqtl datasets available online

ADD REPLYlink 5.0 years ago
P.NJ
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