How can I extract all datasets from GEO relating to Alzheimer's samples from GEO for eqtl analysis ?
Have you found datasets for which you have access to the SNP data (dbGaP data access) and that also have associated gene expression data? Just note that GEO does not have SNP data for human subjects (largely).
no I do not have access to dbGAP, I am using eqtl datasets available online
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