Novel Exon Discovery in RNA Seq

I've used the tuxedo pipeline and I'd like an alternative for detecting novel exons in aligned reads. Does anyone know of any tools that will do something like that?

Thanks

exon novel rnaseq

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updated 4.4 years ago by Ram

• written 11.6 years ago by andrew.j.skelton73

1 answer

Similar to cufflinks you could try Scripture, but the last time I tried it I got an extremely high number of isoforms for some genes.

Another program is SpliceGrapher, which I never tried before.

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updated 6.8 years ago by Ram

• written 11.6 years ago by Pascal

That's great, Thanks!

• 1 views • link

written 11.6 years ago by andrew.j.skelton73

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