Get the list of genes regulated by the Transcription factors and overlay them with the Differentially expressed genes from RNA-Seq data. But I do not think if there is any tool for your specific problem.

You could do something like this:

1. Use Cytoscape to map your list of genes to available interaction networks (like Biogrid available from within Cytoscape). You can visualize if the TFs are directly or indirectly interacting with other protein-coding genes in your list.
2. You can calculate a simple correlation coefficient between all the genes based on the RNASeq data that you have. You can then overlay this information on the interaction network that you build in step 1.
3. Color the edges (relationship) of the interacting nodes (genes) based on high/low correlation. There is an option where you can set a color gradient for e.g. dark green -> dark red for high positive correlation -> high negative correlation.

Cytoscape is a little tricky. You will have to play with the options & read tutorials to get the hang of it.