Splicing factor database

Hi All,

I need a list of human/mouse splicing factors - what databases that are not abandonware do you use?

Thanks in advance!

PS I've found:

SpliceAid 2: a database of human splicing factors expression data and RNA target motifs, which has 71 SF and was last updated in 2013 http://193.206.120.249/splicing_tissue.html
SpliceFac, which seems to be abandonware http://rulai.cshl.edu/cgi-bin/SpliceFac/splicefac.cgi?process=home
SpliceAid F which was published in 2013 and is already broken http://www.caspur.it/SpliceAidF/

database splicing

• 10,555 views • link

updated 3.5 years ago by yangb •

• written 11.8 years ago by dvanic

RBPDB: http://rbpdb.ccbr.utoronto.ca

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written 8.9 years ago by pengchy

None of the links work. Any other suggestions?

• 1 views • link

updated 3.9 years ago by Ram

• written 7.9 years ago by bounlu

Not all RBP involve in splicing, but https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3929597/ might be helpful. While it might a few years old, it's a pretty comprehensive study.

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written 7.9 years ago by Eric Lim

Is there any new splicing factor database? Seem like there is not much update.

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written 3.5 years ago by yangb •

2 answers

Shameless plug: Would ASPicDB fit your need?

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updated 3.9 years ago by Ram

• written 11.8 years ago by gianluca.dellavedova

Sorry if I wasn't clear (or I'm not finding the right link) - I need a list of things that work as splicing factors, not a tool to predict transcripts that could potentially be spliced?

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updated 3.9 years ago by Ram

• written 11.8 years ago by dvanic

SpliceAid F is in http://srv00.ibbe.cnr.it/SpliceAidF/

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updated 3.9 years ago by Ram

• written 10.9 years ago by angel.rubio.diaz •