trinity assemble error , shouldn't have negative delta during EM: -1.5625, round: 84
I run the trinity
./Trinity --seqType fq --JM 32G --left /data2/trinity/clean_data/Sf9-all_1.fq --right /data2/trinity/clean_data/Sf9-all_2.fq --CPU 18 --out Sf9_all_assemble
The assembly does not complete.The problem like this in Butterfly:
butterfly_commands
-shuffle -CPU 24 -failed_cmds failed_butterfly_commands.35911.txt -v *
*Number of Commands: 105304*
*succeeded(65294) 62.0052% completed. shouldn't have negative delta during EM: -1.5625, round: 84
Error is same as in this email : sourceforge.net/p/trinityrnaseq/mailman/message/32792538/
so I download the newest Butterfly.jar ,but the error is still in there.
Thanks in advance for your help.
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wangjun19820303 •
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Have you considered e-mailing the author of Trinity?
b h a a s @ b r o a d i n s t i t u t e . o r g
I will try,thank you.
And? Any updates?
Why does it try to use 24 cpu if you specify 18 in the command?
Sorry, I paste the error parameter of cpu,they were both 18.