I am looking for example PacBio aligned data to have a look at in IGV.
So far I only found PacBio read datasets: https://github.com/PacificBiosciences/DevNet/wiki/Datasets
Are there also PacBio bam files somewhere on the internet that I can download? I don't mind very much which species or sequence type (genome or rna) the data is.
Maybe somebody mapped one of the example read datasets? The human 54x would be the most interesting but any other is also fine.
edit:
I found a bam file with aligned uncorrected PacBio reads against D. melanogaster:
http://bergmanlab.smith.man.ac.uk/?page_id=4
http://bergman.smith.man.ac.uk/data/tracks/dm3/dm3PacBio.bam
However it would be nice to also find a bam file with error corrected PacBio reads aligned against a species.
1 answer
Unfortunately I cannot share our data with you. I do hope someone else can help you.
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Links for bergman lab updated