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Getting Haplotype data from 1000 genome project

Hi all,

Is there any way of getting just the haplotype data of particular population from 1000 genome project.

Thanks in advance for the response.

r hapmap sequencing
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updated by Ram Ram • written by muralinmars • muralinmars

1 answer

Hi Murialinmars.

The 1000 genomes project provides phased vcfs, so you should be able to extract each haplotype from the VCF files. To obtain the particular population bcftools can be used to extract a particular population from these files.

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updated by Ram Ram • written by smilefreak smilefreak

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