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Standalone BLAT database

Salutations fellow computational biologists.

I am running a stand alone (command line) version of BLAT and I'm having trouble finding the appropriate database file for my job.

My sequences are HG19. If anyone has experience with command line BLAT and database files, it would be great. no scratch that awesome if you can direct me to pertinent resources.

TUSEN TAKK

database blat command-line
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updated by Ram Ram • written by QVINTVS_FABIVS_MAXIMVS QVINTVS_FABIVS_MAXIMVS

Is your question, how to create a database for blat? If yes, then you can just use fasta sequences in the command. There is no need to format the fasta sequences into database like you do in Blast.

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updated by Ram Ram • written by Prakki Rama Prakki Rama

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