Do you have any tools for solvent accessibility(ACC) that upload of pdb- id and residue number and output of this program is solvent accessibility?
For example I want many pdb id and residue number
1gfo residue number 256-260
1flt1 ....................345-349
.......and then in output
in 1gfo pdb id residue number:
256=65 ACC
257=190 ACC
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gbahramali •
Thanks for your replying, but I have many pdb file and I want input in one text and also I want some of acc of residue in every pdb file
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gbahramali •
Hello
Thanks for your reply
I have a question about relative solvent acceptability
I have a two groups with many peptides and I want to calculate average of relative solvent acceptability between two groups and how to compare this groups
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gbahramali •
NACCESS, old(er) but still good! Gives you a per-residue accessibility.
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João Rodrigues
You can use iCn3D: https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?mmdbid=1top and click "Analysis > Surface Area". You could also run command line script to get the same information with the Node.js script: https://github.com/ncbi/icn3d/blob/master/icn3dnode/surfacearea.js
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