Does Anyone Know Of A Publication Reviewing Snp/Indel Finding Algorithms For Ngs Data?
Hi all,
Is anyone aware of a good publication that reviews current methods for detecting SNPs/Indels from next gen sequencing data? I have done some searching but so far in vain. It would be great to get an overview of the various methods and their pros and cons.
Thanks in advance.
1 answer
The following link is a very nice review of SNP calling from NGS.
enjoy
If you want details of the algorithms behind a specific tools keep an eye on: https://github.com/lh3/smtl-paper. That's the incoming samtools paper.As you know, one of the most used tools for, among other things, calling snps with nextgen data.
@drio - I think this paper is out now: http://www.ncbi.nlm.nih.gov/pubmed/21903627
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