Command to get BlastDB(Blast Database) information
Hi guys,
I have a very simple question on how to get the information on the size of BLASTDB created using standalone BLAST. I have created several BLAST databases and now I need information on their size, number of sequences and the number of residues they contain. Thank you for your help.
1 answer
Log in to answer this question.
More posts like this
-
blast against Gene Ontology (GO), KEGG, and EuKaryotic Orthologous Group (KOG) databases
written by Bushra Bibi
-
After trimming, how to proceed with the published tutorial of 16S analysis
written by rehab1171 •
-
makeblastdb.exe giving me an unclear error message when creating a database
written by DNAngel
-
NCBI BLAST standalone database in other folder
written by philipp •
-
BLAST against multiple databases and get top hit from each one
written by nancydong20
-
To extract sequences in fasta format (BLAST+)
written by Maverick •
-
Annotating the transcripts of a de novo plant transcriptome
written by Biogeek
-
Running PSI-BLAST Against Multiple Queries
written by Xylanaser
-
Getting Taxonomic Blast Table Output Of 2.2.28 Using A Local Copy Of Nt
written by David M
-
Where To Find The Genome Sizes Of Sequenced Plant Species?
written by Zhaorong
I request for help regarding the extraction of sequences. I would like extract the sequence in various positions from the fasta file containing multiple sequences. I have the list of all positions and would like to save it with sequences and extracted sequences. May I do this with blastdbcmd ..you can guide me for any perl script. Please
Try This:
Extract User Defined Region From An Fasta File