This is a test version of Biostars. For the public version, visit https://www.biostars.org.
rsID and rearranging in vcftools

When I used vcf tools on my .vcf.gz file, I got a file containing:

chromosome# | position | ... | ancestral:count | derived:count

This does not includes rsID. How can I make vcftools include the rsID? Also, is there a way to rearrange the order of the columns? I need a different order for the software I will be using it with. Thanks!

vcftools

Could anyone help with this? I still can't figure it out, and the documentation does not help.

0 answers

No answers yet.

Log in to answer this question.