2 answers
I have used GBrowse as a DAS server - It is relatively easy to set up (especially if you are already using GBrowse). I must admit that it is based on BioPerl. I usually populate the GBrowse database with bp_seqfeature_load.pl script which seems to work well for the data that I deal with.
It's difficult to get past Perl when it comes to DAS servers. There are some suggestions at BioDAS.org. LDAS is a lightweight option, but quite old and does not support newer DAS features. I would also recommend MarkF's suggestion of GBrowse as a DAS server. GBrowse + Bioperl is much easier to set up than it used to be and certainly no "worse" than comparable, complex frameworks, regardless of language.
Log in to answer this question.
-
pick_open_referrence_otus.py in QIIME 1.9.1
written by narasimhulu.bioinfo •
-
Mapping to the TranscriptID
written by essepf •
-
Protein Domain Comparison Of Interproscan Gff Files
written by alejandroriglesias •
-
Possible Gene Unflattening Error In Bp_Genbank2Gff3.Pl Bioperl Script
written by Panos
-
How To Identify Spliceforms In A Gff File?
written by sangerdude •
-
Question : Plotting Per Chromosome/All Chromosome Coverage From Ngs Bam File
written by thecuriousbiologist
-
Light-Weight Script-Based Random Access To Large Gff3 Files Using Biopython
written by Christian
-
How To Use Bioperl
written by Sahil •
-
Gff Parsing In Biopython Is Not So Perfect
written by Gahoo
-
Should We Be Using Much More Json In Our Delimited Data Formats?
written by Casbon •
Have you looked at DAS servers like Perl based Proserver or BioJava based DAZZLE ?
Not sure if this qualify as an answer, so I am adding it to comments. Have you looked at DAS servers like Perl based Prosserver or BioJava based DAZZLE?
Not sure if this helps, so I am adding it to comments. Have you looked at DAS servers like Perl based Prosserver or BioJava based DAZZLE ? sanger.ac.uk/resources/software/proserver biojava.org/wiki/Dazzle