This is a test version of Biostars. For the public version, visit https://www.biostars.org.
chipseq and RNA-seq expression relation

I have basic understanding of Chipseq and RNA seq data and underlying biology, However, I am trying to understand is there a rule of thumb or standard relation if we perform chipseq and RNA seq (hor known TF). I mean RNA seq targets which are enriched in Chip seq will show upregulation or it can not be generalized. Any help in pointing to a previous discussion/ literature will be helpful.

Thanks

chip-seq rnaseq
• 2,954 views • link
updated by Ram Ram • written by kanwarjag kanwarjag

Your question is not clear.Please provide sufficient details about the background of question

• 0 views • link
written by EvoGen • EvoGen

1 answer

This can not be generalized. One tool to check for associaton of TF-binding / RNA-Seq and target genes is http://cistrome.org/BETA/

Pubmed search for TF-activity you should be able to do yourself.

• 0 views • link
written by Ido Tamir Ido Tamir

Log in to answer this question.

More posts like this