Tabix indexing a masterVar file

Has anyone been able to tabix-index a Complete Genomics MasterVar file? if so, mind if I take a peek at how you did it?

index tabix cgi mastervar

• 1,867 views • link

updated 4.8 years ago by Ram

• written 12.2 years ago by fadsfadfdsafdasfdsa

0 answers

No answers yet.

More posts like this

FATAL ERROR on phASER
written 2.9 years ago by Shani •

Hello everyone, I'm encountering issues regarding my vcf file when running phASER. I've tried indexing it both with tabix (tabix -p vcf file.vcf.gz) and bcftools …
HISAT2
written 3.4 years ago by Vikram •

How long does it take for HISAT2 aligner to complete the aligning process ? im using 24 threads and 251RAM. the size of forward and …
Is there equivalent of bgzip in Python?
written 4.4 years ago by magnolia •

Hello, I want to use bgzip in Python and index it with tabix. I figured out tabix part with `pysam.tabix_index` but I don't know how …
Arabidopsis gff3 file for MAJIQ
written 4.7 years ago by hasna.khan •

Just wondering if anyone has been able to use MAJIQ to predict alternative splicing in Arabidopsis? If so, which version of the gff3 file did …
No coverage or very low coverage in the Complete Genomics data
written 8.6 years ago by rse

Hi, Has anyone worked on Complete Genomics data? Most of the exons in the data have no coverage or very low coverage (5-10 reads only) …
tabix indexing issue
written 10.5 years ago by bjlemmer •

I am unable to view my data which I was able to view and manipulate with similar commands prior to this. Running on a Linux …
Corrupted tabix index?
written 10.6 years ago by dariober

Hello, I reported this problem on the [samtools/htsjdk list][1] but I got no reply yet so I'll cross post here. In a Java program I …
Tools that represent standard output from local ancestry estimation software visually
written 12.0 years ago by fadsfadfdsafdasfdsa

The local ancestry tools with which I have worked typically output results like this: 11:51931933 01:339393929 00:1201542287 Meaning, for this chromosome, one copy is ancestry …
Reindex A Vcf File / How To Handle Cosmic Vcf Files
written 13.3 years ago by secretjess

<p>So I have managed to successfully query 1000 Genome VCF files before by following tutorials, I thought I could apply this to the COSMIC database. …
Finding Mutations In A Gene From 69 Genomes
written 13.8 years ago by Pappu

<p>So first I downloaded files like vcfBeta-NA10851-200-37-ASM.vcf.bz2 from the complete genomics website. Then I had to convert it to gz and index by tabix for …