GC content of promoters

I have a file from Chip-Seq data. I want to use this information to look for the GC content of promoters.

Which software I can use?

Thanks
Ankur

gc chip-seq genome

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updated 4.9 years ago by Ram

• written 12.2 years ago by asharmatelome

1 answer

The simplest would be to use nuc option in bedtools.

bedtools nuc -fi $ref-fasta-file -bed $promoterbedfile > $outputfile

Similar questions have been answered before -

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updated 6.6 years ago by Ram

• written 12.2 years ago by aditi.qamra

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