how to make this Graph view

Hello,

I'd like to know which soft you may use to do graph view like that :

(letter are bind or not to plot)

Thanks you in advance,
Charles

software graphic

• 2,885 views • link

updated 4.9 years ago by Ram

• written 12.2 years ago by CrLs •

2 answers

Not exactly but something similar and more sophisticated library is Circos

• 0 views • link

written 12.2 years ago by Sukhi Singh

Thanks you for your answer!

I'll try your way.

Charles

• 0 views • link

updated 6.6 years ago by Ram

• written 12.2 years ago by CrLs •

Or Cytoscape.

• 0 views • link

written 12.2 years ago by sentausa

Hey, thank you, well I'll try both then, I'll come back here to say which one worked for me!

Charles

• 0 views • link

updated 6.6 years ago by Ram

• written 12.2 years ago by CrLs •

More posts like this

shotgun metagenomics degs analysis
written 2.5 years ago by sooni •

Hello. I have shotgun sequencing data. I have a list of bacteria at the species level and a list of genes. What R package do …
How to set soft-clipped bases option in IGV batch script
written 3.6 years ago by JellyFrog •

Hi, I would like to view soft clipped bases in BAMs. I know I can click View-Preference-Alignments-Show soft clipped bases for an individual BAM, but …
Create violin plot with specific value label that corresponding to graph
written 4.9 years ago by sonsunjirachote •

Hello, I need some helps to plot the graph in R. I want to label specific values on my density plot graph by using ggplot …
Problem in soft power selection for WGCNA
written 7.0 years ago by rahmati.razieh83 •

Hi everyone I'm running WGCNA pipeline for 18 samples with about 60000 genes. I do not know which soft power I should consider regarding the …
Strange MA plot from DESeq2
written 8.8 years ago by Yuyayuya •

Hello guys, I got a strange MA plot like this. <a href="https://imgur.com/jcjWNwr"><img src="https://i.imgur.com/jcjWNwr.png" title="source: imgur.com" /></a> The code I used was simply like the manual: …
what package can I use to plot CpG SNP associations?
written 9.1 years ago by dizue •

![CpG-SNP association][1] Hey, I have been looking for package to plot CpG -SNP association for a while but couldn't find any! Does any one know …
Is De-Bruijn graph only the best approach for assembling short reads from 2nd generation sequencing…
written 9.5 years ago by saranpons3

Hello All, I would like to know that "Is De-Bruijn graph only the best approach for assembling short reads from 2nd generation sequencing technologies?" or …
How to get .faa files from a lot of genome from ncbi
written 11.8 years ago by CrLs •

Hi everyone, I'd like to download the faa file from a lot of genome (more than 500) from ncbi. I used the batch Entrez tool …
what is the best way to cut a lot of embl file at given position in a way to obtain a smaller embl …
written 11.8 years ago by CrLs •

Hello, I have a lot of Embl files and i would like to get some sequence from it (for example 'from position : 19944 to …
Looking For A Tool To Compare 2 Sequence
written 12.5 years ago by CrLs •

hello, may be this question has been asked already but I did'nt find any post on the forum. I'd like to compare 2 big dna …