I was told that there is an R implementation of FastQC, but I have not been able to find anything on it after quite a bit of Googling. I am currently using the bash implementation of the non-interactive version, integrated into my workflows. It would be nice to find an R implementation, partly due to the supposed ability to put the output into a PDF which I could then embed into my LaTeX as a figure. Anyone know anything about this, or am I on a wild goose chase? Thanks!
EDIT: I think I answered at least part of my own question, I found this page:
It made me realize that I can just embed the FastQC graphs (which are saved as individual PNG's) in my LaTeX PDF.
1 answer
I think I answered at least part of my own question, I found this page:
It made me realize that I can just embed the FastQC graphs (which are saved as individual PNG's) in my LaTeX PDF.
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thanks for following up, perhaps you could add that as an answer