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Has anyone used GET_HOMOLOGUES

Has anyone used GET_HOMOLOGUES for pan-genome protein conservation/ortholog analysis? http://www.ncbi.nlm.nih.gov/pubmed/24096415 It's supposedly better than orthoMCL?

If you have used it - would you mind sharing your opinion of it and if you'd prefer it to orthoMCL (and why).

Thanks!

conservation comparative-genomics protein ortholog
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updated by Ram Ram • written by Sujai Kumar Sujai Kumar

1 answer

Hi Sujai, I'm Bruno Contreras, one of the authors.

If you're still there, the main advantage is that you can use and combine 3 different clustering algorithms and the perform several downstream analyses, as explained in the manual and tutorial at https://github.com/eead-csic-compbio/get_homologues ,

cheers,
Bruno

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updated by Ram Ram • written by bcontreras • bcontreras

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