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2
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3
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343
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Using GPUs in snakemake
Parabricks gpu snakemake slurm
5 weeks ago by raphael.B ▴ 520
1
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0
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343
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Answer: Answer: Using GPUs in snakemake
5 weeks ago by raphael.B ▴ 520
1
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2
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734
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Comment: Comment: RNA-seq pipeline
4 months ago by raphael.B ▴ 520
2
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1
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965
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Answer: Answer: Individual vs. joint call VCFs
5 months ago by raphael.B ▴ 520
0
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1
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488
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Comment: Comment: bcftools=1.18 not filtering correcting MAF
5 months ago by raphael.B ▴ 520
0
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1
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715
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Answer: Answer: Ann.vcf format
8 months ago by raphael.B ▴ 520
1
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0
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596
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Answer: Answer: functional and genome annotation analysis
8 months ago by raphael.B ▴ 520
0
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0
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557
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Answer: Answer: BCFtools isec output vs BCFtools query
updated 8 months ago by 43k • written 8 months ago by ▴ 520
2
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0
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495
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Answer: Answer: Association Study
8 months ago by raphael.B ▴ 520
1
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0
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4.2k
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Answer: Answer: RVtests CMC output column definitions
9 months ago by raphael.B ▴ 520
0
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0
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983
views
Answer: Answer: matching gnomAD allele frequency
9 months ago by raphael.B ▴ 520
0
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1
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1.7k
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Answer: Answer: GATK memory error with Java
9 months ago by raphael.B ▴ 520
2
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0
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1.3k
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Answer: Answer: Convert files made for b38 into hg19 human reference?
9 months ago by raphael.B ▴ 520
0
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0
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1.7k
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Comment: Comment: Problem with mamba/conda env create
9 months ago by raphael.B ▴ 520
1
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2
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1.7k
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Comment: Comment: Problem with mamba/conda install
9 months ago by raphael.B ▴ 520
1
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0
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720
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Comment: Comment: Hwo to identify that BQSR is performed on CRAM file
9 months ago by raphael.B ▴ 520
1
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1
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720
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Answer: Answer: Hwo to identify that BQSR is performed on CRAM file
10 months ago by raphael.B ▴ 520
0
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0
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637
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Comment: Comment: rust_htslib unrecognized filter ID
11 months ago by raphael.B ▴ 520
2
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2
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637
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rust_htslib unrecognized filter ID
htslib rust SNP filtering
11 months ago by raphael.B ▴ 520
0
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0
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720
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Comment: Comment: Processing WES VCF for case control GWAS analysis
11 months ago by raphael.B ▴ 520
0
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2
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935
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Answer: Answer: bcftools "--filter-logic" flag, what + means?
11 months ago by raphael.B ▴ 520
1
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2
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755
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Answer: Answer: how to call variants in haploid genome
11 months ago by raphael.B ▴ 520
0
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0
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993
views
Comment: Comment: vcftools on 2 snpeff vcf files
12 months ago by raphael.B ▴ 520
0
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1
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993
views
Comment: Comment: vcftools on 2 snpeff vcf files
12 months ago by raphael.B ▴ 520
2
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1
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993
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Answer: Answer: vcftools on 2 snpeff vcf files
12 months ago by raphael.B ▴ 520
1
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1
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991
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Comment: Comment: Any tutorial how to "link" SNPs with genes?
13 months ago by raphael.B ▴ 520
0
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1
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2.3k
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Comment: Comment: Snakemake doesn't recognize output files even though they are created
13 months ago by raphael.B ▴ 520
0
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1
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2.3k
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Comment: Comment: Snakemake doesn't recognize output files even though they are created
13 months ago by raphael.B ▴ 520
2
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0
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1.0k
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Comment: Comment: error with CombineGVCFs to join large number of files
13 months ago by raphael.B ▴ 520
2
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0
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867
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Answer: Answer: multiallelic variants
14 months ago by raphael.B ▴ 520
1
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1
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1.7k
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Comment: Comment: GATK GenotypeGVCFs explain
14 months ago by raphael.B ▴ 520
2
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0
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589
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Answer: Answer: Snakemake error to build synteny from BUSCO .tsv
14 months ago by raphael.B ▴ 520
0
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0
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694
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Comment: Comment: filter VCF based on FORMAT
14 months ago by raphael.B ▴ 520
2
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0
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682
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Answer: Answer: bcftools merge without multiallelic sites
14 months ago by raphael.B ▴ 520
3
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0
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539
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Answer: Answer: use fastQC to get one summary report for all the multiple .gz files
14 months ago by raphael.B ▴ 520
1
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0
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1.5k
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Answer: Answer: Merge several input files to single output file snakemake
14 months ago by raphael.B ▴ 520
0
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1
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1.7k
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Comment: Comment: GATK4.3 ApplyBQSR
15 months ago by raphael.B ▴ 520
0
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1
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1.1k
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Comment: Comment: AF=NA in gnomad vcf
updated 17 months ago by 43k • written 17 months ago by ▴ 520
1
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1
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1.1k
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Answer: Answer: AF=NA in gnomad vcf
updated 17 months ago by 43k • written 17 months ago by ▴ 520
1
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0
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836
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Answer: Answer: STAR Aligment
17 months ago by raphael.B ▴ 520
0
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0
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836
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Comment: Comment: STAR Aligment
17 months ago by raphael.B ▴ 520
0
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0
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2.2k
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Answer: Answer: Count missing and non missing values in a VCF file
19 months ago by raphael.B ▴ 520
1
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0
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834
views
Comment: Comment: Representation of variables in PCA
20 months ago by raphael.B ▴ 520
1
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1
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902
views
Answer: Answer: bcftools merge doesn't recalculate AF
20 months ago by raphael.B ▴ 520
0
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0
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875
views
Answer: Answer: How to check the quality of VCF file for GWAS analysis
20 months ago by raphael.B ▴ 520
1
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1
reply
721
views
Answer: Answer: Count all variants from vcf file
21 months ago by raphael.B ▴ 520
1
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0
replies
769
views
Answer: Answer: BEDtools merge output
21 months ago by raphael.B ▴ 520
0
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1
reply
881
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Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
22 months ago by raphael.B ▴ 520
0
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0
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1.2k
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Comment: Comment: Writing a function in R which will identify peaks within a data frame
22 months ago by raphael.B ▴ 520
3
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1
reply
943
views
Comment: Comment: A question about BED file and finding mutation in vcf file
22 months ago by raphael.B ▴ 520
77 results • Page 1 of 2
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