updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
795
votes
167
replies
142k
views
109 follow
3
votes
0
replies
109
views
updated 13 hours ago by
Ram
43k
•
written 1 day ago by
Claire Watson
▴
60
0
votes
0
replies
95
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
115
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
David Langenberger
11k
0
votes
0
replies
111
views
updated 2 days ago by
Ram
43k
•
written 3 days ago by
carlopecoraro2
★
2.5k
3
votes
0
replies
118
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
82
views
5 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
132
views
updated 5 days ago by
Ram
43k
•
written 6 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
190
views
updated 8 days ago by
Ram
43k
•
written 8 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
176
views
updated 8 days ago by
Ram
43k
•
written 8 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
175
views
0
votes
0
replies
143
views
0
votes
0
replies
180
views
13 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
184
views
updated 15 days ago by
Ram
43k
•
written 15 days ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
130
views
2
votes
0
replies
125
views
2
votes
0
replies
124
views
updated 15 days ago by
Ram
43k
•
written 15 days ago by
Transmitting Science communication
▴
70
2
votes
0
replies
116
views
16 days ago by
Transmitting Science communication
▴
70
12
votes
2
replies
449
views
2
votes
0
replies
118
views
updated 17 days ago by
Ram
43k
•
written 17 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
121
views
updated 18 days ago by
Ram
43k
•
written 19 days ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
175
views
updated 18 days ago by
Ram
43k
•
written 21 days ago by
carlopecoraro2
★
2.5k
8
votes
2
replies
779
views
0
votes
0
replies
144
views
updated 23 days ago by
Ram
43k
•
written 23 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
146
views
25 days ago by
carlopecoraro2
★
2.5k
3
votes
2
replies
582
views
0
votes
0
replies
207
views
updated 29 days ago by
Ram
43k
•
written 29 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
170
views
updated 29 days ago by
Ram
43k
•
written 29 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
165
views
4 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
164
views
5 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
154
views
5 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
232
views
6 weeks ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
168
views
6 weeks ago by
PeterC_NCBI
▴
410
1
vote
1
reply
273
views
updated 6 weeks ago by
dr.eldeib89
•
0
•
written 11 weeks ago by
EMBL Events
▴
10
1
vote
0
replies
198
views
0
votes
0
replies
156
views
updated 6 weeks ago by
Ram
43k
•
written 6 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
153
views
6 weeks ago by
sina.majidian
▴
20
1
vote
0
replies
156
views
1
vote
1
reply
193
views
updated 7 weeks ago by
Ram
43k
•
written 7 weeks ago by
IGB Helper
•
0
0
votes
0
replies
186
views
updated 7 weeks ago by
Ram
43k
•
written 7 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
221
views
8 weeks ago by
bioinformatics.ca
•
0
0
votes
0
replies
175
views
8 weeks ago by
Sole
•
0
0
votes
0
replies
198
views
8 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
249
views
9 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
234
views
0
votes
0
replies
243
views
updated 9 weeks ago by
Ram
43k
•
written 9 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
207
views
updated 9 weeks ago by
Ram
43k
•
written 9 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
183
views
updated 10 weeks ago by
Ram
43k
•
written 10 weeks ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
190
views
0
votes
0
replies
179
views
10 weeks ago by
David Langenberger
11k
Recent Locations •
All
Hong Kong, just now
India, 1 minute ago
Machhagan, 2 minutes ago
Guam, 4 minutes ago
Bologna, 4 minutes ago
Australia, 6 minutes ago
inStem, India, 7 minutes ago
Recent Awards •
All
Popular Question to
rohitsatyam102
▴
850
Popular Question to
candron
▴
10
Scholar to
Alex Reynolds
35k
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Recent Replies
Comment: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Guille
•
0
Thank you for your answer!
The MDS plot seems to group most treatment groups close-by, so I'm starting to suspect the effect of treatment …
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
Mensur Dlakic
★
27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq
by
dsull
★
5.8k
https://maayanlab.cloud/clustergrammer/
It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
Gordon Smyth
★
7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler.
I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Gordon Smyth
★
7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1.
Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu
by
Gordon Smyth
★
7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing
by
cao510927
▴
30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★
2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple:
```r
data <- lapply(files, read_tsv)
data <- Reduce(merge, data) # or Reduce(full_join, data)
```
<a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments
…
Traffic: 1522 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6