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Comment:
Comment: How to handle duplicated genes in TCGA data?
2 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
209
views
Comment:
Comment: Genotyping sites with N in reference genome
4 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
312
views
Comment:
Comment: Extracting mutation status from MAF files - TCGA
7 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
244
views
Comment:
Comment: Obtaining Infinium Methylation450K manifest for hg38
7 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.2k
views
Comment:
Comment: The GDC Legacy Archive is retiring soon.
15 days ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
638
views
Comment:
Comment: How to access TCGA samples that were treated with a specific drug?
15 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.0k
views
Comment:
Comment: Method to detect genome doubling
4 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
323
views
Comment:
Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
5 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
242
views
Comment:
Comment: How to map CPTAC digital pathology slides to sample ID and metadata
12 weeks ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
509
views
Comment:
Comment: How to identify biallelic mutations called using WES data?
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
733
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
733
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
733
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
411
views
Comment:
Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
504
views
Comment:
Comment: Should centering and scaling be done on methylation beta values for principal co
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
963
views
Comment:
Comment: Is it possible to access the code of a bioinformatics article?
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
738
views
Comment:
Comment: Manhattan Plot
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
484
views
Comment:
Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
812
views
Comment:
Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
812
views
Comment:
Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
741
views
Comment:
Comment: Understanding gene level copy number data from TCGAbiolinks
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
571
views
Comment:
Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
493
views
Comment:
Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
493
views
Comment:
Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
669
views
Comment:
Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
571
views
Comment:
Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
941
views
Comment:
Comment: Help locating TCGA data from cbioportal
6 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
892
views
Comment:
Comment: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
1.1k
views
Comment:
Comment: CPTAC data download, transcriptomics
7 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
0
replies
1.6k
views
Comment:
Comment: Can BWA (mem) detect longer deletions?
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
1.1k
views
Comment:
Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
665
views
Comment:
Comment: TPM RNA-seq data for differential expression analysis
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
466
views
Comment:
Comment: Comparing multiple RNASeq studies
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.2k
views
Comment:
Comment: Calculation of TMB on gene level
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
528
views
Comment:
Comment: Understanding TCGA barcodes with dot in the fieldname
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
795
views
Comment:
Comment: CNV calling
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
760
views
Comment:
Comment: Is a PON necessary for tumor-normal matched Mutect2?
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
561
views
Comment:
Comment: TCGA gene expression quantitation batch information
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
760
views
Comment:
Comment: Is a PON necessary for tumor-normal matched Mutect2?
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
541
views
Comment:
Comment: Differential gene expression with specif genes of interest
9 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
1.1k
views
Comment:
Comment: What database would have a list of gene names and aliases for yeast?
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.6k
views
Comment:
Comment: Merge BAM files from (totally) different references
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
682
views
Comment:
Comment: Is it possible to interpret HGVS without transcript version number?
9 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
944
views
Comment:
Comment: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
9 months ago by
Zhenyu Zhang
★ 1.2k
3
votes
1
reply
554
views
Comment:
Comment: Send BAM files from server to cluster
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
781
views
Comment:
Comment: PON and germline files for Mutect2 Tumor-only mode
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.5k
views
Comment:
Comment: How can I generate a list of 100 genomic intervals from bam files?
9 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
497
views
Comment:
Comment: Is it ok to do Indel realignment after removing subsets of reads?
10 months ago by
Zhenyu Zhang
★ 1.2k
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