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Comment: Comment: The GDC Legacy Archive is retiring soon.
3 days ago by Zhenyu Zhang ★ 1.2k
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518
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Comment: Comment: How to access TCGA samples that were treated with a specific drug?
3 days ago by Zhenyu Zhang ★ 1.2k
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2
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1.1k
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
3 days ago by Zhenyu Zhang ★ 1.2k
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1
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983
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Comment: Comment: Method to detect genome doubling
21 days ago by Zhenyu Zhang ★ 1.2k
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307
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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
26 days ago by Zhenyu Zhang ★ 1.2k
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196
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
28 days ago by Zhenyu Zhang ★ 1.2k
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557
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Answer: Answer: Artificial deletion in bam
4 weeks ago by Zhenyu Zhang ★ 1.2k
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374
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
4 weeks ago by Zhenyu Zhang ★ 1.2k
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253
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Answer: Answer: Quantify the junction abundance?
4 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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403
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Answer: Answer: lncRNA from TCGA
4 weeks ago by Zhenyu Zhang ★ 1.2k
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332
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Answer: Answer: Can I have multiple active GDC download tokens?
5 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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284
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
7 weeks ago by Zhenyu Zhang ★ 1.2k
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306
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
7 weeks ago by Zhenyu Zhang ★ 1.2k
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177
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Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 1.2k
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Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
9 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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320
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Answer: Answer: TCGA metadata intersection
10 weeks ago by Zhenyu Zhang ★ 1.2k
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237
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Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
10 weeks ago by Zhenyu Zhang ★ 1.2k
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322
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Answer: Answer: How to find clinical data for TARGET AML
10 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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491
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Comment: Comment: How to identify biallelic mutations called using WES data?
10 weeks ago by Zhenyu Zhang ★ 1.2k
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710
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Comment: Comment: TCGA Biospecimens Slides Extraction
10 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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710
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Comment: Comment: TCGA Biospecimens Slides Extraction
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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710
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Comment: Comment: TCGA Biospecimens Slides Extraction
11 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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400
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
12 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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545
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Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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494
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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932
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Comment: Comment: Is it possible to access the code of a bioinformatics article?
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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932
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Answer: Answer: Is it possible to access the code of a bioinformatics article?
3 months ago by Zhenyu Zhang ★ 1.2k
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723
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Comment: Comment: Manhattan Plot
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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473
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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777
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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777
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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720
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Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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496
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Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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445
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Answer: Answer: Diferences between TCGAbiolinks and cBioportal
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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565
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
5 months ago by Zhenyu Zhang ★ 1.2k
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0
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486
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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486
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
5 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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646
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Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
5 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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565
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
5 months ago by Zhenyu Zhang ★ 1.2k
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1
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915
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Comment: Comment: Help locating TCGA data from cbioportal
5 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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646
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Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
5 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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877
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Comment: Comment: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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1.1k
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Comment: Comment: CPTAC data download, transcriptomics
6 months ago by Zhenyu Zhang ★ 1.2k
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622
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Answer: Answer: cptac data download
6 months ago by Zhenyu Zhang ★ 1.2k
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1.6k
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Comment: Comment: Can BWA (mem) detect longer deletions?
6 months ago by Zhenyu Zhang ★ 1.2k
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1.1k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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1.1k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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877
views
Answer: Answer: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by Zhenyu Zhang ★ 1.2k
0
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2
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1.1k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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5.9k
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Answer: Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by Zhenyu Zhang ★ 1.2k
246 results • Page 1 of 5
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