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336
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Comment:
Comment: How to handle duplicated genes in TCGA data?
2 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
209
views
Comment:
Comment: Genotyping sites with N in reference genome
4 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
312
views
Comment:
Comment: Extracting mutation status from MAF files - TCGA
7 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
244
views
Comment:
Comment: Obtaining Infinium Methylation450K manifest for hg38
7 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
244
views
Answer:
Answer: Nomalization - TCGA, RNA-seq and Microarray
7 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.2k
views
Comment:
Comment: The GDC Legacy Archive is retiring soon.
15 days ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
638
views
Comment:
Comment: How to access TCGA samples that were treated with a specific drug?
15 days ago by
Zhenyu Zhang
★ 1.2k
1
vote
2
replies
1.2k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
15 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.0k
views
Comment:
Comment: Method to detect genome doubling
4 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
323
views
Comment:
Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
5 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
209
views
Answer:
Answer: Human Methylation Infinum Bead - probe to gene mapping
5 weeks ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
584
views
Answer:
Answer: Artificial deletion in bam
6 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
386
views
Answer:
Answer: Help with finding Genomic coordinates and exon they belong to
6 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
261
views
Answer:
Answer: Quantify the junction abundance?
6 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
415
views
Answer:
Answer: lncRNA from TCGA
6 weeks ago by
Zhenyu Zhang
★ 1.2k
2
votes
0
replies
347
views
Answer:
Answer: Can I have multiple active GDC download tokens?
7 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
292
views
Answer:
Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
8 weeks ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
319
views
Answer:
Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
9 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
200
views
Forum:
What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc
tcga
genomics-data-commons
updated 10 weeks ago by
Ram
43k • written 11 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
1.5k
views
Answer:
Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
11 weeks ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
334
views
Answer:
Answer: TCGA metadata intersection
11 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
242
views
Comment:
Comment: How to map CPTAC digital pathology slides to sample ID and metadata
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
336
views
Answer:
Answer: How to find clinical data for TARGET AML
12 weeks ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
510
views
Comment:
Comment: How to identify biallelic mutations called using WES data?
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
733
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
733
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
733
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
412
views
Comment:
Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
567
views
Answer:
Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
505
views
Comment:
Comment: Should centering and scaling be done on methylation beta values for principal co
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
963
views
Comment:
Comment: Is it possible to access the code of a bioinformatics article?
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
963
views
Answer:
Answer: Is it possible to access the code of a bioinformatics article?
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
738
views
Comment:
Comment: Manhattan Plot
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
484
views
Comment:
Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
812
views
Comment:
Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
812
views
Comment:
Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
741
views
Comment:
Comment: Understanding gene level copy number data from TCGAbiolinks
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
508
views
Answer:
Answer: Help doing differential expression analysis -experimental design and gProfiler T
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
455
views
Answer:
Answer: Diferences between TCGAbiolinks and cBioportal
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
571
views
Comment:
Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
493
views
Comment:
Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
493
views
Comment:
Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
670
views
Comment:
Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
571
views
Comment:
Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
941
views
Comment:
Comment: Help locating TCGA data from cbioportal
6 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
1
reply
670
views
Answer:
Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
892
views
Comment:
Comment: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
1.1k
views
Comment:
Comment: CPTAC data download, transcriptomics
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
632
views
Answer:
Answer: cptac data download
7 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
0
replies
1.6k
views
Comment:
Comment: Can BWA (mem) detect longer deletions?
7 months ago by
Zhenyu Zhang
★ 1.2k
251 results • Page
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