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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
5 days ago by Zhenyu Zhang ★ 1.2k
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265
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Comment: Comment: Where to find old version of GATK best practice
12 days ago by Zhenyu Zhang ★ 1.2k
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0
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265
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Comment: Comment: Where to find old version of GATK best practice
12 days ago by Zhenyu Zhang ★ 1.2k
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4
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265
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Where to find old version of GATK best practice
gatk
12 days ago by Zhenyu Zhang ★ 1.2k
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0
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417
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Comment: Comment: How to handle duplicated genes in TCGA data?
16 days ago by Zhenyu Zhang ★ 1.2k
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0
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304
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Comment: Comment: Genotyping sites with N in reference genome
18 days ago by Zhenyu Zhang ★ 1.2k
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0
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339
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Comment: Comment: Extracting mutation status from MAF files - TCGA
20 days ago by Zhenyu Zhang ★ 1.2k
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0
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271
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Comment: Comment: Obtaining Infinium Methylation450K manifest for hg38
20 days ago by Zhenyu Zhang ★ 1.2k
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0
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263
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Answer: Answer: Nomalization - TCGA, RNA-seq and Microarray
20 days ago by Zhenyu Zhang ★ 1.2k
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0
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1.2k
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Comment: Comment: The GDC Legacy Archive is retiring soon.
28 days ago by Zhenyu Zhang ★ 1.2k
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1
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700
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Comment: Comment: How to access TCGA samples that were treated with a specific drug?
28 days ago by Zhenyu Zhang ★ 1.2k
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2
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1.2k
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
28 days ago by Zhenyu Zhang ★ 1.2k
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1
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1.0k
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Comment: Comment: Method to detect genome doubling
6 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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337
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Comment: Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
7 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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217
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Answer: Answer: Human Methylation Infinum Bead - probe to gene mapping
7 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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604
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Answer: Answer: Artificial deletion in bam
8 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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400
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Answer: Answer: Help with finding Genomic coordinates and exon they belong to
8 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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270
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Answer: Answer: Quantify the junction abundance?
8 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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427
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Answer: Answer: lncRNA from TCGA
8 weeks ago by Zhenyu Zhang ★ 1.2k
2
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0
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372
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Answer: Answer: Can I have multiple active GDC download tokens?
9 weeks ago by Zhenyu Zhang ★ 1.2k
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1
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314
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Answer: Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
10 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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330
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Answer: Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
11 weeks ago by Zhenyu Zhang ★ 1.2k
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0
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221
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Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 3 months ago by 44k • written 3 months ago by ★ 1.2k
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2
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1.5k
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Answer: Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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350
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Answer: Answer: TCGA metadata intersection
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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264
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Comment: Comment: How to map CPTAC digital pathology slides to sample ID and metadata
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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349
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Answer: Answer: How to find clinical data for TARGET AML
3 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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526
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Comment: Comment: How to identify biallelic mutations called using WES data?
3 months ago by Zhenyu Zhang ★ 1.2k
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0
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768
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Comment: Comment: TCGA Biospecimens Slides Extraction
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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768
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Comment: Comment: TCGA Biospecimens Slides Extraction
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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768
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Comment: Comment: TCGA Biospecimens Slides Extraction
3 months ago by Zhenyu Zhang ★ 1.2k
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1
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423
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
3 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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592
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Answer: Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
4 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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529
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
4 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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1.0k
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Comment: Comment: Is it possible to access the code of a bioinformatics article?
4 months ago by Zhenyu Zhang ★ 1.2k
1
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1
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1.0k
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Answer: Answer: Is it possible to access the code of a bioinformatics article?
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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783
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Comment: Comment: Manhattan Plot
4 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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502
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
4 months ago by Zhenyu Zhang ★ 1.2k
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0
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857
views
Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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857
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Comment: Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
4 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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765
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Comment: Comment: Understanding gene level copy number data from TCGAbiolinks
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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523
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Answer: Answer: Help doing differential expression analysis -experimental design and gProfiler T
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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475
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Answer: Answer: Diferences between TCGAbiolinks and cBioportal
6 months ago by Zhenyu Zhang ★ 1.2k
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0
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599
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Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by Zhenyu Zhang ★ 1.2k
0
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0
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513
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by Zhenyu Zhang ★ 1.2k
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1
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513
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Comment: Comment: Appropriate genome reference for converting TCGA VCF files to MAF
6 months ago by Zhenyu Zhang ★ 1.2k
1
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0
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694
views
Comment: Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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599
views
Comment: Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
6 months ago by Zhenyu Zhang ★ 1.2k
0
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1
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980
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Comment: Comment: Help locating TCGA data from cbioportal
6 months ago by Zhenyu Zhang ★ 1.2k
2
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1
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694
views
Answer: Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by Zhenyu Zhang ★ 1.2k
255 results • Page 1 of 6
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