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226
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Mutual information method for gene markers identification ???
scRNA-seq mutual-information
updated 4 months ago by 44k • written 4 months ago by ▴ 100
0
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1
reply
500
views
PyMOL: how to list all selection names?
pymol
updated 8 months ago by ★ 2.0k • written 8 months ago by ▴ 100
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0
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2.6k
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Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
10 months ago by Ondina ▴ 100
6
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7
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2.6k
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Set up label.color with the same colors as the cluster colors in Seurat DimPlot() ?
seurat scRNA-seq
10 months ago by Ondina ▴ 100
1
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0
replies
2.6k
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Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
10 months ago by Ondina ▴ 100
0
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1
reply
2.6k
views
Comment: Comment: Set up label.color with the same colors as the cluster colors in Seurat DimPlot(
10 months ago by Ondina ▴ 100
1
vote
0
replies
705
views
Comment: Comment: Samtools sort error: [pretty_header] invalid header
11 months ago by Ondina ▴ 100
1
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1
reply
705
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Comment: Comment: Samtools sort error: [pretty_header] invalid header
11 months ago by Ondina ▴ 100
0
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1
reply
705
views
Comment: Comment: Samtools sort error: [pretty_header] invalid header
11 months ago by Ondina ▴ 100
4
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5
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705
views
Samtools sort error: [pretty_header] invalid header
sam RNA-seq bam samtools
updated 11 months ago by 44k • written 11 months ago by ▴ 100
1
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0
replies
691
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Answer: Answer: MatrisomeDB down?
16 months ago by Ondina ▴ 100
0
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1
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691
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Comment: Comment: MatrisomeDB down?
16 months ago by Ondina ▴ 100
3
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4
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691
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MatrisomeDB down?
matrisome database
updated 16 months ago by 142k • written 16 months ago by ▴ 100
1
vote
1
reply
696
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Best method for small cluster (<100 cells) differential expression analysis in single-cell analysis
differential single-cell seurat expression
17 months ago by Ondina ▴ 100
0
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0
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2.2k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
18 months ago by Ondina ▴ 100
0
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0
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2.2k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
18 months ago by Ondina ▴ 100
5
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5
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2.2k
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Searching for a way to plot Seurat style equivalent dotplot for gene expression with DESeq on RNA-seq data
dotplot DESeq rna-seq visualisation
18 months ago by Ondina ▴ 100
12
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5
replies
2.3k
views
scRNA-seq: Which is the best method for computing the % of similarity between two clusters using R?
RNAseq singlecell clustering
updated 21 months ago by ▴ 800 • written 2.4 years ago by ▴ 100
0
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0
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583
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Comment: Comment: GEO Query error
22 months ago by Ondina ▴ 100
2
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2
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583
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GEO Query error
GEOQuery
22 months ago by Ondina ▴ 100
4
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2
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1.3k
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Is there a way to easily export a .mtx file from a seurat object and use it in the scNetViz app for Cytoscape?
conversion cytoscape singlecell format seurat
updated 23 months ago by ▴ 620 • written 23 months ago by ▴ 100
0
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0
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587
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Comment: Comment: getting a job only with masters degree
2.3 years ago by Ondina ▴ 100
0
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0
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2.3k
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Comment: Comment: scRNA-seq: Which is the best method for computing the % of similarity between tw
2.4 years ago by Ondina ▴ 100
0
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0
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5.5k
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Comment: Comment: How to compare two Seurat object (sample) in order to find top markers?
2.4 years ago by Ondina ▴ 100
2
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1
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5.5k
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Answer: Answer: How to compare two Seurat object (sample) in order to find top markers?
2.6 years ago by Ondina ▴ 100
2
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2
replies
1.1k
views
Volcano 3D plot on single cell seurat data ?
single-cell volcano3d seurat
2.5 years ago by Ondina ▴ 100
1
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0
replies
1.1k
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Answer: Answer: Volcano 3D plot on single cell seurat data ?
2.5 years ago by Ondina ▴ 100
0
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0
replies
1.6k
views
Comment: Comment: cellranger count help
2.7 years ago by Ondina ▴ 100
3
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4
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3.2k
views
Searching expression for one particular gene in Seurat object issue (Seurat, R)
Seurat scRNA-seq R
updated 2.7 years ago by ★ 17k • written 2.7 years ago by ▴ 100
0
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1
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3.2k
views
Comment: Comment: Searching expression for one particular gene in Seurat object issue (Seurat, R)
2.7 years ago by Ondina ▴ 100
0
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0
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21k
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Comment: Comment: subsetting out cells from seurat object based on expression of 1 gene
2.7 years ago by Ondina ▴ 100
0
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1
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21k
views
Comment: Comment: subsetting out cells from seurat object based on expression of 1 gene
2.7 years ago by Ondina ▴ 100
0
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0
replies
2.8k
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Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
2.7 years ago by Ondina ▴ 100
0
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1
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2.8k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
2.7 years ago by Ondina ▴ 100
0
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0
replies
2.8k
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Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
2.7 years ago by Ondina ▴ 100
0
votes
1
reply
2.8k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
2.7 years ago by Ondina ▴ 100
0
votes
1
reply
2.8k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
updated 2.7 years ago by 142k • written 2.7 years ago by ▴ 100
3
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9
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2.8k
views
Filter DGElist object: keep only genes expressed in sample at the same time as a particular gene of interest
edger RNA-seq dgelist R
2.7 years ago by Ondina ▴ 100
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