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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 weeks ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 weeks ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
9 weeks ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
9 weeks ago by lcj34 ▴ 420
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1.8k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
10 weeks ago by lcj34 ▴ 420
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
10 weeks ago by lcj34 ▴ 420
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1
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1.8k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
10 weeks ago by lcj34 ▴ 420
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1
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1.8k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
10 weeks ago by lcj34 ▴ 420
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1
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1.8k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
10 weeks ago by lcj34 ▴ 420
1
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0
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244
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Answer: Answer: adding new assemblies to previously built practical haplotype graph (v2)
10 weeks ago by lcj34 ▴ 420
1
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0
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771
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
11 weeks ago by lcj34 ▴ 420
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771
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
11 weeks ago by lcj34 ▴ 420
0
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2
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771
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
11 weeks ago by lcj34 ▴ 420
0
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1
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771
views
Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
11 weeks ago by lcj34 ▴ 420
1
vote
1
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771
views
Answer: Answer: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
11 weeks ago by lcj34 ▴ 420
2
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0
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375
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Answer: Answer: how to add non-reference genes to BED file of intervals for PHG
12 weeks ago by lcj34 ▴ 420
0
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0
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525
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Comment: Comment: Practical Haplotype Graph
3 months ago by lcj34 ▴ 420
1
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1
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525
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Answer: Answer: Practical Haplotype Graph
3 months ago by lcj34 ▴ 420
1
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1
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1.9k
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Comment: Comment: Practical Haplotype Graph Paths
4 months ago by lcj34 ▴ 420
1
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1
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1.9k
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Comment: Comment: Practical Haplotype Graph Paths
4 months ago by lcj34 ▴ 420
1
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1
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1.9k
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Comment: Comment: Practical Haplotype Graph Paths
4 months ago by lcj34 ▴ 420
1
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1
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1.9k
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Comment: Comment: Practical Haplotype Graph Paths
5 months ago by lcj34 ▴ 420
2
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0
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346
views
Answer: Answer: AssemblyMAFFromAnchorWavePlugin IndexOutOfBoundsException
5 months ago by lcj34 ▴ 420
2
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1
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494
views
Answer: Answer: PopulatePHGDBPipelinePlugin fails on example database
6 months ago by lcj34 ▴ 420
2
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1
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1.9k
views
Answer: Answer: Practical Haplotype Graph Paths
6 months ago by lcj34 ▴ 420
0
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0
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408
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Answer: Answer: Unknown error using MAFToGVCF Plugin from practical haplotype graph (phg) and ta
7 months ago by lcj34 ▴ 420
0
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1
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494
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Answer: Answer: VCF file from PHG for loading into BreedBase
9 months ago by lcj34 ▴ 420
0
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0
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505
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Comment: Comment: Error occured at the PHG imputation step: allele in genotype not in the variant
11 months ago by lcj34 ▴ 420
0
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1
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931
views
Comment: Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
12 months ago by lcj34 ▴ 420
0
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1
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931
views
Comment: Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
12 months ago by lcj34 ▴ 420
0
votes
1
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931
views
Answer: Answer: Impute haplotypes (ImputePipelinePlugin) execution error - PHG
12 months ago by lcj34 ▴ 420
1
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0
replies
1.0k
views
Answer: Answer: Expected number of haplotype IDs per path in PHG
12 months ago by lcj34 ▴ 420
0
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0
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440
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Comment: Comment: PHG - Error in encodePathArrayFromSet()
13 months ago by lcj34 ▴ 420
0
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0
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1.0k
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Comment: Comment: Expected number of haplotype IDs per path in PHG
13 months ago by lcj34 ▴ 420
0
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1
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1.0k
views
Comment: Comment: Expected number of haplotype IDs per path in PHG
13 months ago by lcj34 ▴ 420
0
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1
reply
1.1k
views
Comment: Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin?
14 months ago by lcj34 ▴ 420
0
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0
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964
views
Answer: Answer: Practical Haplotype Graph -- Pathing Error
14 months ago by lcj34 ▴ 420
0
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1
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1.1k
views
Answer: Answer: PHG -imputeTarget pathToVCF plugin not writing expected output files?
14 months ago by lcj34 ▴ 420
0
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0
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964
views
Comment: Comment: Practical Haplotype Graph -- Pathing Error
15 months ago by lcj34 ▴ 420
0
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0
replies
1.1k
views
Answer: Answer: PHG Load haplotype and create consensus
15 months ago by lcj34 ▴ 420
0
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1
reply
1.5k
views
Comment: Comment: Can PHG handle spanning deletions in GVCF genotypes?
15 months ago by lcj34 ▴ 420
0
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1
reply
964
views
Comment: Comment: Practical Haplotype Graph -- Pathing Error
15 months ago by lcj34 ▴ 420
1
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0
replies
2.5k
views
Comment: Comment: Practical Haplotype Graph Consensus and Imputation Specifications
15 months ago by lcj34 ▴ 420
1
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1
reply
697
views
Answer: Answer: Incorrect gvcfServerPath for reference genome
updated 15 months ago by 142k • written 15 months ago by ▴ 420
1
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1
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1.9k
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Comment: Comment: imputing haplotypes from variants in a VCF file - vcfIndexFile
15 months ago by lcj34 ▴ 420
1
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1
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1.9k
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Answer: Answer: imputing haplotypes from variants in a VCF file - vcfIndexFile
15 months ago by lcj34 ▴ 420
0
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1
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2.5k
views
Comment: Comment: Practical Haplotype Graph Consensus and Imputation Specifications
15 months ago by lcj34 ▴ 420
1
vote
0
replies
1.3k
views
Comment: Comment: No localGVCFFolder parameter in config file - problem passing parameter to pipel
15 months ago by lcj34 ▴ 420
1
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1
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1.3k
views
Comment: Comment: No localGVCFFolder parameter in config file - problem passing parameter to pipel
15 months ago by lcj34 ▴ 420
1
vote
1
reply
873
views
Answer: Answer: Clarification on the usage of pangenomeHaplotypeMethod/pathHaplotypeMethod
15 months ago by lcj34 ▴ 420
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