Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
262
views
Answer: Answer: vg call is time consuming
7 weeks ago by glenn.hickey ▴ 520
0
votes
1
reply
1.2k
views
Answer: Answer: need interpretations for the vg call output
6 months ago by glenn.hickey ▴ 520
1
vote
0
replies
774
views
Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
6 months ago by glenn.hickey ▴ 520
1
vote
0
replies
406
views
Answer: Answer: Issues while installing VG
6 months ago by glenn.hickey ▴ 520
0
votes
0
replies
800
views
Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
7 months ago by glenn.hickey ▴ 520
2
votes
1
reply
540
views
Answer: Answer: vg call coverage/suppport
7 months ago by glenn.hickey ▴ 520
0
votes
1
reply
800
views
Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
7 months ago by glenn.hickey ▴ 520
1
vote
0
replies
465
views
Answer: Answer: How to change the output reference for vg giraffe BAM output
8 months ago by glenn.hickey ▴ 520
2
votes
0
replies
548
views
Comment: Comment: Can vg stats -a be used on a bam file?
8 months ago by glenn.hickey ▴ 520
2
votes
3
replies
1.3k
views
Answer: Answer: How to identify which genome the variations in the pan-genome graph originate fr
9 months ago by glenn.hickey ▴ 520
1
vote
1
reply
1.5k
views
Comment: Comment: Speed up vg call ?
9 months ago by glenn.hickey ▴ 520
1
vote
1
reply
1.5k
views
Comment: Comment: Speed up vg call ?
9 months ago by glenn.hickey ▴ 520
2
votes
0
replies
477
views
Answer: Answer: Has anyone tried a combination of vg and cactus
10 months ago by glenn.hickey ▴ 520
2
votes
1
reply
1.2k
views
Answer: Answer: population-level stratagy of vg call
10 months ago by glenn.hickey ▴ 520
1
vote
0
replies
1.0k
views
Comment: Comment: vg map time consuming
10 months ago by glenn.hickey ▴ 520
0
votes
0
replies
974
views
Answer: Answer: unable to find most of SVs in constructed graph.vg
10 months ago by glenn.hickey ▴ 520
0
votes
1
reply
974
views
Answer: Answer: unable to find most of SVs in constructed graph.vg
10 months ago by glenn.hickey ▴ 520
2
votes
1
reply
974
views
Answer: Answer: unable to find most of SVs in constructed graph.vg
10 months ago by glenn.hickey ▴ 520
2
votes
0
replies
1.5k
views
Answer: Answer: Speed up vg call ?
14 months ago by glenn.hickey ▴ 520
1
vote
0
replies
645
views
Answer: Answer: Using VG to extract path sequences/sub-sequences
14 months ago by glenn.hickey ▴ 520
1
vote
0
replies
669
views
Answer: Answer: vg sort gam file by read name
14 months ago by glenn.hickey ▴ 520
2
votes
1
reply
2.5k
views
Answer: Answer: vg augment/call - Excessively high memory usage for some chromosomes
14 months ago by glenn.hickey ▴ 520
1
vote
1
reply
2.3k
views
Answer: Answer: Using VG to genotype a GAM using a graph constructed from GFA
2.6 years ago by glenn.hickey ▴ 520
0
votes
1
reply
947
views
Answer: Answer: Vg Call, not detecting SV due to soft-clipping
3.1 years ago by glenn.hickey ▴ 520
1
vote
1
reply
1.2k
views
Answer: Answer: Identify coordinates from the VCF generated from Vg call
3.1 years ago by glenn.hickey ▴ 520
1
vote
0
replies
768
views
Answer: Answer: cannot see variations on graph image
3.1 years ago by glenn.hickey ▴ 520
2
votes
0
replies
940
views
Answer: A: Handling of Reverse Strand in GAM file
3.4 years ago by glenn.hickey ▴ 520
1
vote
0
replies
1.2k
views
Answer: A: empty vcf from vg call
3.4 years ago by glenn.hickey ▴ 520
1
vote
0
replies
966
views
Answer: A: Issue on vg call order of paths
3.4 years ago by glenn.hickey ▴ 520
1
vote
0
replies
1.2k
views
Answer: A: vg call has very different variant number between xg and hg
3.4 years ago by glenn.hickey ▴ 520
1
vote
0
replies
1.2k
views
Answer: A: Whole genome alignment graph building
3.6 years ago by glenn.hickey ▴ 520
1
vote
0
replies
1.2k
views
Answer: A: Merge multiple vcfs vgtools
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 520
0
votes
0
replies
1.2k
views
Answer: A: Merge multiple vcfs vgtools
3.8 years ago by glenn.hickey ▴ 520
0
votes
0
replies
3.2k
views
Comment: C: GAF format from vg
3.8 years ago by glenn.hickey ▴ 520
2
votes
1
reply
2.1k
views
Answer: A: Vg call in a specific region
3.9 years ago by glenn.hickey ▴ 520
0
votes
0
replies
1.2k
views
Answer: A: vg deconstruct with path sizes
3.9 years ago by glenn.hickey ▴ 520
0
votes
0
replies
718
views
Answer: A: How can i use several samples of resequencing data to get a visualize paths
3.9 years ago by glenn.hickey ▴ 520
2
votes
1
reply
1.6k
views
Answer: A: Converting gam to gaf
3.9 years ago by glenn.hickey ▴ 520
1
vote
0
replies
993
views
Answer: A: vg map with long assembled contigs
3.9 years ago by glenn.hickey ▴ 520
1
vote
0
replies
1.9k
views
Comment: A: passing a third-party GFA to vg tools
3.9 years ago by glenn.hickey ▴ 520
2
votes
1
reply
1.3k
views
Answer: A: Merging .gam files
3.9 years ago by glenn.hickey ▴ 520
0
votes
0
replies
857
views
Answer: A: vg sv calling
4.1 years ago by glenn.hickey ▴ 520
0
votes
0
replies
1.5k
views
Answer: A: vg docker image
4.1 years ago by glenn.hickey ▴ 520
0
votes
0
replies
860
views
Answer: A: How do I deal with duplicate reads when using vg to analyse WGS data?
4.3 years ago by glenn.hickey ▴ 520
1
vote
1
reply
1.7k
views
Answer: A: Segmentation fault (core dumped) during vg surject
4.3 years ago by glenn.hickey ▴ 520
1
vote
0
replies
759
views
Answer: A: Edit distance of an alignment
4.3 years ago by glenn.hickey ▴ 520
1
vote
0
replies
1.3k
views
Answer: A: Extracting specific regions(ex, chr1:100-200 of hg38) from whole genome .vg and
updated 4.4 years ago by 35k • written 4.4 years ago by ▴ 520
0
votes
1
reply
1.2k
views
Answer: A: More haplotype threads than expected
4.4 years ago by glenn.hickey ▴ 520
2
votes
1
reply
1.1k
views
Answer: A: How to determine haplotypes from variation graphs
4.4 years ago by glenn.hickey ▴ 520
1
vote
0
replies
1.4k
views
Answer: A: VG view command hangs with no result (VG Toolkit)
4.4 years ago by glenn.hickey ▴ 520
53 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6