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2
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319
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Comment: Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
10 days ago by Giulio Genovese ▴ 410
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2
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442
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Answer: Answer: Can Metal merge two GWAS Summary data even if the versions of SNP id are differe
10 weeks ago by Giulio Genovese ▴ 410
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494
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
3 months ago by Giulio Genovese ▴ 410
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494
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
3 months ago by Giulio Genovese ▴ 410
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1
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494
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
3 months ago by Giulio Genovese ▴ 410
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1
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494
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
3 months ago by Giulio Genovese ▴ 410
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512
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Answer: Answer: How to find SNP locations in assemblies other than hg38
3 months ago by Giulio Genovese ▴ 410
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533
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
3 months ago by Giulio Genovese ▴ 410
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703
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Comment: Comment: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
4 months ago by Giulio Genovese ▴ 410
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1
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703
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Comment: Comment: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
4 months ago by Giulio Genovese ▴ 410
2
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1
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703
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
4 months ago by Giulio Genovese ▴ 410
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1
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679
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Comment: Comment: Picard Liftover MismatchedRefAllele PsychArray
7 months ago by Giulio Genovese ▴ 410
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1.1k
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Comment: Comment: How to choose LiftOver chain file
7 months ago by Giulio Genovese ▴ 410
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1.2k
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Comment: Comment: Idat raw data conversion
8 months ago by Giulio Genovese ▴ 410
1
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1
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1.2k
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Comment: Comment: Idat raw data conversion
8 months ago by Giulio Genovese ▴ 410
3
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1
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1.1k
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Answer: Answer: Liftover GRCh37 to hg38 1kg/GATK.
8 months ago by Giulio Genovese ▴ 410
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954
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Answer: Answer: how to change the 'bcftools plugin' temp directory
9 months ago by Giulio Genovese ▴ 410
1
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0
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621
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Answer: Answer: Liftedover vcf header/contig compatibility
9 months ago by Giulio Genovese ▴ 410
2
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2.2k
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Answer: Answer: Using LiftOver to change genomic build
15 months ago by Giulio Genovese ▴ 410
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0
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2.3k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
15 months ago by Giulio Genovese ▴ 410
2
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0
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894
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Answer: Answer: Axiom PMRA cel files to VCF format
15 months ago by Giulio Genovese ▴ 410
1
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0
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2.3k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
15 months ago by Giulio Genovese ▴ 410
1
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2
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2.3k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
15 months ago by Giulio Genovese ▴ 410
1
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1
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2.3k
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Comment: Comment: Can't liftover vcf file from hg19 to hg38
15 months ago by Giulio Genovese ▴ 410
5
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2
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2.3k
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Answer: Answer: Can't liftover vcf file from hg19 to hg38
15 months ago by Giulio Genovese ▴ 410
0
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0
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1.7k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
16 months ago by Giulio Genovese ▴ 410
1
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1
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1.7k
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Answer: Answer: High ref mismatch rate after liftOver from 23andme hg19 to hg38
16 months ago by Giulio Genovese ▴ 410
0
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0
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2.3k
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Answer: Answer: gatk LiftoverVCF finishes with no output VCF nor error.
16 months ago by Giulio Genovese ▴ 410
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0
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1.2k
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Answer: Answer: Looking for LDL GWAS summary stats in hg38
16 months ago by Giulio Genovese ▴ 410
2
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0
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2.5k
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Comment: Comment: Picard LiftOver rejecting all Variants
16 months ago by Giulio Genovese ▴ 410
4
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1
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2.5k
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Answer: Answer: Picard LiftOver rejecting all Variants
16 months ago by Giulio Genovese ▴ 410
0
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3.4k
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Comment: Comment: How can I create an Illumina report in Linux using IDAT files?
3.1 years ago by Giulio Genovese ▴ 410
0
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0
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3.4k
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Comment: Comment: How can I create an Illumina report in Linux using IDAT files?
3.1 years ago by Giulio Genovese ▴ 410
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2.4k
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Comment: C: What reference build are affymetrix 5.0 arrays?
4.4 years ago by Giulio Genovese ▴ 410
0
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1
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2.4k
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Comment: C: What reference build are affymetrix 5.0 arrays?
4.4 years ago by Giulio Genovese ▴ 410
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1
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2.4k
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Answer: A: What reference build are affymetrix 5.0 arrays?
4.4 years ago by Giulio Genovese ▴ 410
0
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0
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2.2k
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Answer: A: SNP array CNV calling for Cancer tissue (.CEL files)
4.4 years ago by Giulio Genovese ▴ 410
0
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0
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3.9k
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Answer: A: conversion from CEL file to PLINK format (.map, .ped)
4.4 years ago by Giulio Genovese ▴ 410
0
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0
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5.3k
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Answer: A: How to convert and annotate apt-probeset-genotype into PLINK format
4.4 years ago by Giulio Genovese ▴ 410
1
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1
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8.2k
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Answer: A: Get Genotypes From Affymetrix Snp 6.0 Array
4.4 years ago by Giulio Genovese ▴ 410
1
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0
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3.9k
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Answer: A: Illumina Manifest files - A1 vs. A2
4.4 years ago by Giulio Genovese ▴ 410
0
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1
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1.9k
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Answer: A: Is there an allternative to Affymetrix GTC for Genotyping?
4.4 years ago by Giulio Genovese ▴ 410
1
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1
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5.9k
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Answer: A: Automate Illumina GenomeStudio With Python Script
4.4 years ago by Giulio Genovese ▴ 410
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1
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3.7k
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Answer: A: Are there any GenomeStudio alternatives to process Illumina genotyping array?
4.4 years ago by Giulio Genovese ▴ 410
1
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1
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9.1k
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Answer: A: From genotype raw data .idat to PLINK files
4.4 years ago by Giulio Genovese ▴ 410
0
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0
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4.2k
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Answer: A: How to extract and save the header of .bam,vcf and idat files in a text file
4.4 years ago by Giulio Genovese ▴ 410
0
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0
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4.0k
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Answer: A: Recalling SNPs count from Illumina SNP array raw data
4.4 years ago by Giulio Genovese ▴ 410
0
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0
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3.7k
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Answer: A: how to use idat file for analyses in bioconductor
4.4 years ago by Giulio Genovese ▴ 410
0
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0
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3.3k
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Answer: A: genotyping according to the red/green intensity for illumina microarray?
4.4 years ago by Giulio Genovese ▴ 410
1
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0
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2.1k
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Answer: A: How to create manifest file for Illumnina GTCtoVCF
4.4 years ago by Giulio Genovese ▴ 410
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