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Comment: Comment: GTF file for HIV strain pNL4-3
11 weeks ago by xiaoleiusc ▴ 140
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How can I get the sequences of the first 20nt of introns and the last 250nt of introns of hg38 genome?
annotation RNA
updated 12 weeks ago by 8.6k • written 12 weeks ago by ▴ 140
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13k
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Comment: Comment: Repeat masker bed file
12 weeks ago by xiaoleiusc ▴ 140
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421
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Comment: Comment: How can I get the sequences of the first 20nt of introns and the last 250nt of i
12 weeks ago by xiaoleiusc ▴ 140
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11k
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Comment: Comment: cutadapt for trimming reads to specific length
12 weeks ago by xiaoleiusc ▴ 140
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11k
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Comment: Comment: cutadapt for trimming reads to specific length
12 weeks ago by xiaoleiusc ▴ 140
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0
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19k
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Comment: Comment: Downloading gtf file for RefSeq
4 months ago by xiaoleiusc ▴ 140
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879
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Comment: Comment: Error message in Standalone BLAST
4 months ago by xiaoleiusc ▴ 140
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939
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Answer: Answer: IGV RNAseq- Splice junction
5 months ago by xiaoleiusc ▴ 140
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3.4k
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Comment: Comment: "Valid" names for paired-end reads
5 months ago by xiaoleiusc ▴ 140
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6
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843
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Search a read by its name in a big fastq.gz file
NGS fastq
updated 5 months ago by 43k • written 5 months ago by ▴ 140
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1.5k
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Comment: Comment: Bowtie2 end-to-end versus local alignment for small RNAseq
5 months ago by xiaoleiusc ▴ 140
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0
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843
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Comment: Comment: Search a read by its name in a big fastq.gz file
5 months ago by xiaoleiusc ▴ 140
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0
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18k
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Comment: Comment: Running STAR aligner on paired-end reads as single-end read
5 months ago by xiaoleiusc ▴ 140
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1
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843
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Comment: Comment: Search a read by its name in a big fastq.gz file
5 months ago by xiaoleiusc ▴ 140
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1
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3.7k
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Comment: Comment: Should I remove Kmers identified in FastQC?
6 months ago by xiaoleiusc ▴ 140
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0
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3.9k
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Comment: Comment: Chimeric alignment with minimap2
6 months ago by xiaoleiusc ▴ 140
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1
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879
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Comment: Comment: Error message in Standalone BLAST
6 months ago by xiaoleiusc ▴ 140
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7.8k
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Comment: Comment: Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
6 months ago by xiaoleiusc ▴ 140
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0
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1.6k
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Comment: Comment: Star alignment - AS and MD tags
6 months ago by xiaoleiusc ▴ 140
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2
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4.5k
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Comment: Comment: Is trimming necessary for RNAseq?
6 months ago by xiaoleiusc ▴ 140
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0
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6.8k
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Comment: Comment: SE reads in fr-firststrand, fr-secondstrand
6 months ago by xiaoleiusc ▴ 140
2
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1
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593
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are transcripts in the Ensembl transcript release of human from certain cell types?
annotation RNA-seq
updated 10 months ago by ▴ 510 • written 10 months ago by ▴ 140
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517
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Comment: Comment: multi-mapping reads settings in Rsubread or Rsubjunc
12 months ago by xiaoleiusc ▴ 140
1
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2
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517
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multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc RNA-seq
12 months ago by xiaoleiusc ▴ 140
1
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0
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4.7k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
15 months ago by xiaoleiusc ▴ 140
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1
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4.7k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
15 months ago by xiaoleiusc ▴ 140
0
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1
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4.7k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
21 months ago by xiaoleiusc ▴ 140
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0
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1.8k
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Answer: Answer: Fastq reads mapped to the desired position on reference genome
updated 18 months ago by 43k • written 2.1 years ago by ▴ 140
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1.5k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
2.5 years ago by xiaoleiusc ▴ 140
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1
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1.5k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
2.5 years ago by xiaoleiusc ▴ 140
1
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5
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1.5k
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Find a human mRNA transcript with specific dinucleotide frequencies close to user input values
Python RNA-seq R
updated 15 months ago by 43k • written 2.5 years ago by ▴ 140
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5.8k
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Comment: Comment: How To Join Text Files By A Certain Column (Accession Id)
2.5 years ago by xiaoleiusc ▴ 140
1
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1
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4.7k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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4.7k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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4.7k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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4.7k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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63k
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Comment: Comment: Insert Size And Fragment Size ?
2.5 years ago by xiaoleiusc ▴ 140
1
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1
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1.6k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
2.6 years ago by xiaoleiusc ▴ 140
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1
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25k
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Comment: Comment: Check if BAM is derived from pair-end or single-end reads?
2.6 years ago by xiaoleiusc ▴ 140
0
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1
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1.6k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
2.6 years ago by xiaoleiusc ▴ 140
2
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6
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1.6k
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calculate nucleotides frequencies from mapped reads in a BAM file
RNA-seq
updated 2.6 years ago by 8.7k • written 2.6 years ago by ▴ 140
1
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0
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584
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Is there a public database where I could download mRNA seq (transcriptome) data of 293T cells
RNA-seq Database Public
2.6 years ago by xiaoleiusc ▴ 140
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0
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13k
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Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
2.6 years ago by xiaoleiusc ▴ 140
0
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1
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13k
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Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
2.6 years ago by xiaoleiusc ▴ 140
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0
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40k
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Comment: Comment: Why Does Rna-Seq Read Count Fit Poisson Distribution?
2.6 years ago by xiaoleiusc ▴ 140
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0
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4.7k
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Comment: Comment: Forge a BSgenome data package
2.7 years ago by xiaoleiusc ▴ 140
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1
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2.2k
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Comment: Comment: Loading a genome in BSgenome
2.7 years ago by xiaoleiusc ▴ 140
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0
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14k
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Comment: Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
2.6 years ago by xiaoleiusc ▴ 140
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0
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14k
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Comment: Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
2.7 years ago by xiaoleiusc ▴ 140
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