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2
replies
366
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How to obtain Node/ Edge information from a Reactome Pathway
R API pathways reactome databases
updated 5 weeks ago by 142k • written 9 weeks ago by ▴ 140
0
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0
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366
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Comment: Comment: How to obtain Node/ Edge information from a Reactome Pathway
9 weeks ago by K.patel5 ▴ 140
0
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0
replies
369
views
How to read count information from an old RGB based Agilent DNA array
CNV Agilent DNA WGS
9 months ago by K.patel5 ▴ 140
1
vote
0
replies
334
views
Can ART be used to generate a WES .sam file rather than a WGS file?
genomics biology WGS synthetic WES
18 months ago by K.patel5 ▴ 140
1
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5
replies
764
views
Advice on how to generate synthetic Copy Number Variation data
CNV genomics biology synthetic WES
updated 19 months ago by ▴ 280 • written 19 months ago by ▴ 140
0
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0
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764
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Comment: Comment: Advice on how to generate synthetic Copy Number Variation data
19 months ago by K.patel5 ▴ 140
0
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1
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764
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Comment: Comment: Advice on how to generate synthetic Copy Number Variation data
19 months ago by K.patel5 ▴ 140
0
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0
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1.2k
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Comment: Comment: How to add transcript and cpg site information to a bed file
19 months ago by K.patel5 ▴ 140
0
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0
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1.2k
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Comment: Comment: How to add transcript and cpg site information to a bed file
19 months ago by K.patel5 ▴ 140
0
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1
reply
890
views
VEP/ CADD error - ERROR: Assembly is GRCh38 but CADD file does not contain GRCh38 in header.
CADD trio WES VEP
updated 11 months ago by ▴ 690 • written 20 months ago by ▴ 140
0
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1
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1.2k
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Comment: Comment: Plot GSEA software results into R
2.0 years ago by K.patel5 ▴ 140
0
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0
replies
442
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Comment: Comment: Dataset or repository to look for RNA seq datasets using ribosomal depletion for
2.0 years ago by K.patel5 ▴ 140
3
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4
replies
1.2k
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How to add transcript and cpg site information to a bed file
genomics annotations cpg BED
19 months ago by K.patel5 ▴ 140
0
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0
replies
1.4k
views
Comment: Comment: How to pipe bcftools query to bcftools fill-tags
2.1 years ago by K.patel5 ▴ 140
1
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2
replies
1.4k
views
How to pipe bcftools query to bcftools fill-tags
BCFtools variant-calling genomics
updated 10 months ago by 43k • written 2.1 years ago by ▴ 140
0
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0
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452
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Comment: Comment: miRNA-lncRNA interaction prediction
2.2 years ago by K.patel5 ▴ 140
0
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0
replies
812
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Comment: Comment: RNAseq and future analysis
2.2 years ago by K.patel5 ▴ 140
0
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0
replies
969
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Comment: Comment: How to use BCFtools to keep variants if they are `DP > 10` in all samples?
2.2 years ago by K.patel5 ▴ 140
4
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3
replies
969
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How to use BCFtools to keep variants if they are `DP > 10` in all samples?
BCFtools variant-calling genomics
updated 10 months ago by 43k • written 2.2 years ago by ▴ 140
0
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1
reply
1.4k
views
Comment: Comment: Transcription factors database
2.2 years ago by K.patel5 ▴ 140
1
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0
replies
923
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Comment: Comment: Network Analysis - how to generate the edges and vertices dataset?
2.2 years ago by K.patel5 ▴ 140
0
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1
reply
2.3k
views
Comment: Comment: Biomart getLDS between two plant genomes does not work
2.3 years ago by K.patel5 ▴ 140
2
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0
replies
2.6k
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Answer: Answer: Binary heatmap using R
2.3 years ago by K.patel5 ▴ 140
0
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1
reply
2.6k
views
Comment: Comment: Heatmap R
2.3 years ago by K.patel5 ▴ 140
1
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1
reply
2.0k
views
Comment: Comment: GATK4 - To be known or not to be known, that is the question.
2.3 years ago by K.patel5 ▴ 140
7
votes
3
replies
2.0k
views
GATK4 - To be known or not to be known, that is the question.
WGS WES flags GATK
updated 2.3 years ago by 5.7k • written 2.3 years ago by ▴ 140
0
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0
replies
1.4k
views
Comment: Comment: GATK4 -known-sites input Recalibrate Base Quality Scores
2.3 years ago by K.patel5 ▴ 140
2
votes
3
replies
1.9k
views
VEP - How to retrieve information from the INFO column of a vcf file neatly
tab vcf annotations VEP
updated 2.2 years ago by 11k • written 2.3 years ago by ▴ 140
0
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0
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1.9k
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Comment: Comment: VEP - How to retrieve information from the INFO column of a vcf file neatly
2.3 years ago by K.patel5 ▴ 140
0
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0
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1.4k
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Comment: Comment: Strangely too low P-value and Adjusted P-value(FDR) DESeq2 and edgeR
2.3 years ago by K.patel5 ▴ 140
0
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0
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3.9k
views
Comment: Comment: How to create specific .bed files for a panel of genes
2.3 years ago by K.patel5 ▴ 140
0
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0
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3.9k
views
Comment: Comment: How to create specific .bed files for a panel of genes
2.3 years ago by K.patel5 ▴ 140
7
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4
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3.9k
views
How to create specific .bed files for a panel of genes
panel genomics BED
2.3 years ago by K.patel5 ▴ 140
0
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0
replies
1.9k
views
Comment: Comment: Attempting to generate a bam.bai file but the output is not readable
2.4 years ago by K.patel5 ▴ 140
0
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1
reply
1.9k
views
Comment: Comment: Attempting to generate a bam.bai file but the output is not readable
2.4 years ago by K.patel5 ▴ 140
4
votes
4
replies
1.9k
views
Attempting to generate a bam.bai file but the output is not readable
exome samtools sequencing BAM
2.4 years ago by K.patel5 ▴ 140
3
votes
2
replies
1.0k
views
Is it necessary to test for multiple correction during differential expression analysis on microRNA data?
microRNA miRNA-seq differential expression stats
updated 3.2 years ago by 8.7k • written 3.2 years ago by ▴ 140
0
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1
reply
2.2k
views
Comment: C: How does miRdeep2 normalise sequences
3.4 years ago by K.patel5 ▴ 140
5
votes
6
replies
2.2k
views
How does miRdeep2 normalise sequences
miRNA sequencing miRDeep2
updated 2.7 years ago by ▴ 10 • written 3.4 years ago by ▴ 140
0
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0
replies
3.2k
views
Comment: C: Why do some gene set enrichment services do not ask for a background data set
4.2 years ago by K.patel5 ▴ 140
0
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1
reply
3.2k
views
Comment: C: Why do some gene set enrichment services do not ask for a background data set
4.3 years ago by K.patel5 ▴ 140
5
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4
replies
3.2k
views
Why do some gene set enrichment services do not ask for a background data set
enrichr panther GOrilla GSEA
4.3 years ago by K.patel5 ▴ 140
0
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0
replies
1.6k
views
Comment: C: Processing .raw files or out.tar files from Mass Spec
4.8 years ago by K.patel5 ▴ 140
1
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2
replies
1.6k
views
Processing .raw files or out.tar files from Mass Spec
mass spec R proteomics
4.8 years ago by K.patel5 ▴ 140
0
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1
reply
1.6k
views
Comment: C: fastq dump usage of microRNA-seq data
4.9 years ago by K.patel5 ▴ 140
0
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0
replies
1.6k
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Comment: C: fastq dump usage of microRNA-seq data
4.9 years ago by K.patel5 ▴ 140
0
votes
0
replies
1.6k
views
Comment: C: fastq dump usage of microRNA-seq data
4.9 years ago by K.patel5 ▴ 140
7
votes
8
replies
1.6k
views
fastq dump usage of microRNA-seq data
RNA-Seq microRNA fastq
4.9 years ago by K.patel5 ▴ 140
8
votes
2
replies
3.4k
views
Removing low level expression genes from microarray experiments
next-gen microarray
updated 4.9 years ago by 35k • written 4.9 years ago by ▴ 140
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