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154
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Diffbind and DESeq2 comparison for differential sites
diffbind deseq2
updated 28 days ago by 43k • written 4 weeks ago by ▴ 500
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239
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Comment: Comment: Why counting by diffbind and featurecounts differ?
5 weeks ago by Ankit ▴ 500
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2
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239
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Why counting by diffbind and featurecounts differ?
featurecounts diffbind
5 weeks ago by Ankit ▴ 500
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0
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384
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Comment: Comment: Guidance for connecting a rare phenotype to a genotype in a small family sample
3 months ago by Ankit ▴ 500
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1
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384
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Comment: Comment: Guidance for connecting a rare phenotype to a genotype in a small family sample
3 months ago by Ankit ▴ 500
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1
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1.0k
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Comment: Comment: sc-RNA seq pipeline
4 months ago by Ankit ▴ 500
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0
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936
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Comment: Comment: heatmap does not look like good
4 months ago by Ankit ▴ 500
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1
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936
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Comment: Comment: heatmap does not look like good
4 months ago by Ankit ▴ 500
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0
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257
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Metagene / Average Profile Plots background correction required or not?
chip-seq cutandrun IgG
updated 4 months ago by 43k • written 4 months ago by ▴ 500
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0
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552
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Answer: Answer: Annotate list of GSMxxxx GEO sample IDs with matching source GSExxx dataset iden
4 months ago by Ankit ▴ 500
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0
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660
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Comment: Comment: Normalization and Genome-Wide Comparisons with Chipseq
4 months ago by Ankit ▴ 500
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0
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559
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Comment: Comment: Enrichment profiles from counts
4 months ago by Ankit ▴ 500
1
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1
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660
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Comment: Comment: Normalization and Genome-Wide Comparisons with Chipseq
4 months ago by Ankit ▴ 500
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0
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421
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Comment: Comment: .str to .bed /.bim/.fam file conversion
4 months ago by Ankit ▴ 500
0
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1
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421
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Comment: Comment: .str to .bed /.bim/.fam file conversion
4 months ago by Ankit ▴ 500
2
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1
reply
660
views
Comment: Comment: Normalization and Genome-Wide Comparisons with Chipseq
4 months ago by Ankit ▴ 500
0
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1
reply
559
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Comment: Comment: Enrichment profiles from counts
4 months ago by Ankit ▴ 500
3
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1
reply
773
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Comment: Comment: merging replicates
4 months ago by Ankit ▴ 500
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0
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850
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Comment: Comment: frequency plot for peaks
5 months ago by Ankit ▴ 500
1
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2
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850
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Comment: Comment: frequency plot for peaks
5 months ago by Ankit ▴ 500
0
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1
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850
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Comment: Comment: frequency plot for peaks
5 months ago by Ankit ▴ 500
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0
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1.2k
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Comment: Comment: R based query about making pairwise matrix
8 months ago by Ankit ▴ 500
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0
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1.2k
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Comment: Comment: R based query about making pairwise matrix
8 months ago by Ankit ▴ 500
0
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1
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1.2k
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Comment: Comment: R based query about making pairwise matrix
8 months ago by Ankit ▴ 500
0
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2
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1.2k
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Comment: Comment: R based query about making pairwise matrix
8 months ago by Ankit ▴ 500
6
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10
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1.2k
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Making pairwise matrix using ChIP-Seq peak binding matrix in R
R matrix binding Chip-seq
8 months ago by Ankit ▴ 500
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2
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727
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Network analysis for two Factors
chip-seq network-analysis
updated 8 months ago by 43k • written 15 months ago by ▴ 500
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0
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727
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Comment: Comment: Network analysis for two Factors
15 months ago by Ankit ▴ 500
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1
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1.4k
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Comment: Comment: Make large matrix data interpretable. How?
16 months ago by Ankit ▴ 500
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1
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1.6k
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Comment: Comment: Tools / Packages to assess allele specific methylation?
16 months ago by Ankit ▴ 500
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1
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1.4k
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Comment: Comment: Make large matrix data interpretable. How?
16 months ago by Ankit ▴ 500
0
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1
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1.6k
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Comment: Comment: Tools / Packages to assess allele specific methylation?
16 months ago by Ankit ▴ 500
3
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6
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1.6k
views
Tools / Packages to assess allele specific methylation?
SNP Bismark allele-specific-methylation
updated 16 months ago by 6.4k • written 2.6 years ago by ▴ 500
6
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8
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1.4k
views
Make large matrix data interpretable. How?
R matrix
updated 16 months ago by ★ 27k • written 16 months ago by ▴ 500
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0
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1.4k
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Comment: Comment: Make large matrix data interpretable. How?
16 months ago by Ankit ▴ 500
1
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1
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569
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How to determine methylation state of loci with C to T mutation?
Methylation Mutation DNA
updated 17 months ago by ▴ 30 • written 17 months ago by ▴ 500
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0
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693
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Comment: Comment: How to get the genes from an identified motif using HOMER?
17 months ago by Ankit ▴ 500
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1
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2.3k
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Comment: Comment: Tools to obtain sequence from bam file
19 months ago by Ankit ▴ 500
0
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0
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669
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Comment: Comment: How to obtain GO:Slim terms for multiple GO:terms
19 months ago by Ankit ▴ 500
1
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2
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669
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How to obtain GO:Slim terms for multiple GO:terms
GO GOterms GoSlim
19 months ago by Ankit ▴ 500
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0
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1.1k
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Comment: Comment: High Redundancy Rate in MACS2 Peak Calling for TF ChIP-Seq
19 months ago by Ankit ▴ 500
0
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0
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770
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Comment: Comment: How can I make a reference genome from multiple genomes?
19 months ago by Ankit ▴ 500
0
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1
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1.1k
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Comment: Comment: High Redundancy Rate in MACS2 Peak Calling for TF ChIP-Seq
19 months ago by Ankit ▴ 500
0
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1
reply
2.3k
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Comment: Comment: Tools to obtain sequence from bam file
20 months ago by Ankit ▴ 500
0
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1
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2.3k
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Comment: Comment: Tools to obtain sequence from bam file
20 months ago by Ankit ▴ 500
5
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13
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2.3k
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Tools to obtain sequence from bam file
sequencing Bam indels
updated 19 months ago by ★ 3.8k • written 20 months ago by ▴ 500
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2
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2.3k
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Comment: Comment: Tools to obtain sequence from bam file
20 months ago by Ankit ▴ 500
0
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0
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659
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Comment: Comment: Genome-wide enrichment of histone marks and correlation with gene expression: Ap
21 months ago by Ankit ▴ 500
0
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2
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659
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Genome-wide enrichment of histone marks and correlation with gene expression: Approach/Tools?
histone genomic rna-seq chip-seq chromhmm
21 months ago by Ankit ▴ 500
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0
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3.2k
views
Comment: Comment: error while testing nextflow with --genome GRCh38
22 months ago by Ankit ▴ 500
241 results • Page 1 of 5
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