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Comment: Comment: Differential gene expression design using Deseq2
3 months ago by swbarnes2 14k
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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1.1k
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Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
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586
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Answer: Answer: Help interpreting Samtools Flagstat results
3 months ago by swbarnes2 14k
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483
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Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
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483
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Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
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709
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Comment: Comment: No tumour cells in clustering of tumor sample?!
4 months ago by swbarnes2 14k
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784
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Comment: Comment: DESeq2 heatmap with low baseMean values
4 months ago by swbarnes2 14k
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784
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Comment: Comment: DESeq2 heatmap with low baseMean values
4 months ago by swbarnes2 14k
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355
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Answer: Answer: Interpretation of output from MiXCR TCR sequencing
4 months ago by swbarnes2 14k
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370
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Answer: Answer: Strand information from reverse stranded RNA-seq
4 months ago by swbarnes2 14k
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645
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Comment: Comment: bcl2fastq problems with the yield
5 months ago by swbarnes2 14k
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645
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Answer: Answer: bcl2fastq problems with the yield
5 months ago by swbarnes2 14k
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702
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Comment: Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
5 months ago by swbarnes2 14k
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496
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Answer: Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
5 months ago by swbarnes2 14k
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410
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Answer: Answer: Bulk and Single Cell RNA-seq online course
5 months ago by swbarnes2 14k
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852
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Answer: Answer: STAR ALIGNMENT
6 months ago by swbarnes2 14k
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852
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Comment: Comment: STAR ALIGNMENT
6 months ago by swbarnes2 14k
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992
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Answer: Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
6 months ago by swbarnes2 14k
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1
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877
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Comment: Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
6 months ago by swbarnes2 14k
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782
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Answer: Answer: RNAseq how to map Mouse+Virus Genome with STAR
6 months ago by swbarnes2 14k
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1.0k
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Comment: Comment: deal with PCA and my samples
6 months ago by swbarnes2 14k
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757
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Answer: Answer: batch correction in DESeq2
6 months ago by swbarnes2 14k
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1.4k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
7 months ago by swbarnes2 14k
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1
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1.4k
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Comment: Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
7 months ago by swbarnes2 14k
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622
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
7 months ago by swbarnes2 14k
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470
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Answer: Answer: Help with DESeq2 Analysis of Multiple Conditions
7 months ago by swbarnes2 14k
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776
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Comment: Comment: DESeq2: DESeqDataSetFromMatrix Error
7 months ago by swbarnes2 14k
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1
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776
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Answer: Answer: DESeq2: DESeqDataSetFromMatrix Error
7 months ago by swbarnes2 14k
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0
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551
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Comment: Comment: Use SAM files in ref_map.pl
7 months ago by swbarnes2 14k
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646
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Comment: Comment: Discrepancy in Alignment Rates: HISAT2 vs FeatureCounts
7 months ago by swbarnes2 14k
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1
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917
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Answer: Answer: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
7 months ago by swbarnes2 14k
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1
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773
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Answer: Answer: DESeq2 analysis using two featureCounts generated from different studies
7 months ago by swbarnes2 14k
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1
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1.1k
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Comment: Comment: Adding a control sample to bulk RNA-seq
7 months ago by swbarnes2 14k
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0
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749
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Comment: Comment: How to DESeq2 using miRNA data obtained using TCGAbiolinks
7 months ago by swbarnes2 14k
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1.1k
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Answer: Answer: Adding a control sample to bulk RNA-seq
8 months ago by swbarnes2 14k
1
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0
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593
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
8 months ago by swbarnes2 14k
2
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0
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541
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Answer: Answer: DESeq2 design comparing changes through 2 timepoints of 2 different treatments.
8 months ago by swbarnes2 14k
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512
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Answer: Answer: sequencing machines output files layout
8 months ago by swbarnes2 14k
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1
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543
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Answer: Answer: DESeqDataSetFromMatrix error
8 months ago by swbarnes2 14k
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0
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469
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Answer: Answer: Deseq2
8 months ago by swbarnes2 14k
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1
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596
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Comment: Comment: htseq-count reports count values for deleted genes
8 months ago by swbarnes2 14k
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0
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765
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Comment: Comment: How to Add Mutations to the sequence
8 months ago by swbarnes2 14k
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0
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1.4k
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Comment: Comment: Formatting RNA-Seq Data for Kruskal Wallis Test on R
8 months ago by swbarnes2 14k
2
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0
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1.2k
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Comment: Comment: STAR mapping - regarding output files content
9 months ago by swbarnes2 14k
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0
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957
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Comment: Comment: RSEM uses different gene lengths for each sample.
9 months ago by swbarnes2 14k
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0
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792
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Answer: Answer: DESEQ2 analysis - PCA plot
9 months ago by swbarnes2 14k
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725
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Comment: Comment: Can I extract a complete sequence of gene from mapped reads bam file
9 months ago by swbarnes2 14k
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0
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478
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Answer: Answer: Add gene counts of same samples run on two lanes (Novaseq)
9 months ago by swbarnes2 14k
2
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1
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651
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Answer: Answer: bcl2fastq not recognizing multiple barcode-mismatch argument
10 months ago by swbarnes2 14k
2,009 results • Page 2 of 41
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