Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
297
views
Answer: Answer: Sequence read length shorter than flow cell specification
6 days ago by swbarnes2 14k
1
vote
0
replies
619
views
Comment: Comment: PCA plot (Suggestions Needed)
7 days ago by swbarnes2 14k
0
votes
1
reply
847
views
Comment: Comment: Adding CB tag to bam file
7 days ago by swbarnes2 14k
1
vote
0
replies
619
views
Comment: Comment: PCA plot (Suggestions Needed)
7 days ago by swbarnes2 14k
0
votes
0
replies
619
views
Comment: Comment: PCA plot (Suggestions Needed)
7 days ago by swbarnes2 14k
0
votes
1
reply
483
views
Comment: Comment: To get p-values for the TPM
7 days ago by swbarnes2 14k
1
vote
0
replies
329
views
Comment: Comment: Should I use unpaired reads from trimmomatic
8 days ago by swbarnes2 14k
0
votes
0
replies
269
views
Answer: Answer: from row count to tpm
9 days ago by swbarnes2 14k
0
votes
1
reply
478
views
Comment: Comment: Marking duplicates using UMIs
11 days ago by swbarnes2 14k
0
votes
0
replies
494
views
Comment: Comment: Free/open source 23andme-like analysis
12 days ago by swbarnes2 14k
0
votes
0
replies
1.3k
views
Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
12 days ago by swbarnes2 14k
0
votes
1
reply
847
views
Comment: Comment: Adding CB tag to bam file
12 days ago by swbarnes2 14k
0
votes
0
replies
748
views
Comment: Comment: RNA seq differential expression analysis
13 days ago by swbarnes2 14k
0
votes
1
reply
847
views
Answer: Answer: Adding CB tag to bam file
13 days ago by swbarnes2 14k
2
votes
1
reply
675
views
Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
14 days ago by swbarnes2 14k
0
votes
0
replies
589
views
Answer: Answer: Removing adapter/primer sequence from reads while keeping flanking regions
4 weeks ago by swbarnes2 14k
0
votes
1
reply
589
views
Comment: Comment: Removing adapter/primer sequence from reads while keeping flanking regions
4 weeks ago by swbarnes2 14k
0
votes
0
replies
421
views
Comment: Comment: Seeking Help with Unexpected MA Plot Output
4 weeks ago by swbarnes2 14k
1
vote
0
replies
423
views
Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
4 weeks ago by swbarnes2 14k
0
votes
0
replies
328
views
Answer: Answer: Find out shared differentially expressed genes between two cell lines due to kno
6 weeks ago by swbarnes2 14k
0
votes
0
replies
301
views
Answer: Answer: Detecting viruses in human rna seq data
6 weeks ago by swbarnes2 14k
1
vote
1
reply
416
views
Answer: Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
6 weeks ago by swbarnes2 14k
2
votes
0
replies
552
views
Answer: Answer: Overriding a color palette in R to emphasize specific data points
6 weeks ago by swbarnes2 14k
0
votes
0
replies
571
views
Comment: Comment: RNA_seq
6 weeks ago by swbarnes2 14k
0
votes
1
reply
571
views
Answer: Answer: RNA_seq
7 weeks ago by swbarnes2 14k
1
vote
0
replies
367
views
Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
7 weeks ago by swbarnes2 14k
2
votes
0
replies
380
views
Answer: Answer: Re. Batch effect correction in data with a design matrix without full rank
7 weeks ago by swbarnes2 14k
0
votes
1
reply
528
views
Answer: Answer: RNA Seq Sample Outlier
7 weeks ago by swbarnes2 14k
1
vote
1
reply
400
views
Answer: Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
8 weeks ago by swbarnes2 14k
1
vote
1
reply
443
views
Answer: Answer: (STAR) What causes a high number of reads that are unmapped because they are too
8 weeks ago by swbarnes2 14k
2
votes
1
reply
311
views
Answer: Answer: Single cell rna sequencing analysis using R help
8 weeks ago by swbarnes2 14k
3
votes
0
replies
418
views
Answer: Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
8 weeks ago by swbarnes2 14k
1
vote
0
replies
249
views
Answer: Answer: biological replicate in STAR command
9 weeks ago by swbarnes2 14k
1
vote
0
replies
388
views
Answer: Answer: PCA plot analysis
9 weeks ago by swbarnes2 14k
0
votes
1
reply
445
views
Answer: Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
10 weeks ago by swbarnes2 14k
2
votes
0
replies
319
views
Comment: Comment: Getting less DE genes when incorporating all samples
10 weeks ago by swbarnes2 14k
1
vote
0
replies
453
views
Comment: Comment: Count table statistical analysis
11 weeks ago by swbarnes2 14k
1
vote
1
reply
568
views
Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
12 weeks ago by swbarnes2 14k
0
votes
0
replies
568
views
Answer: Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
12 weeks ago by swbarnes2 14k
1
vote
0
replies
588
views
Comment: Comment: Three fastq files
12 weeks ago by swbarnes2 14k
0
votes
0
replies
491
views
Comment: Comment: Differential gene expression design using Deseq2
12 weeks ago by swbarnes2 14k
0
votes
1
reply
1.1k
views
Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
0
votes
1
reply
1.1k
views
Comment: Comment: Expression analysis of LncRNA from RNA-seq data
3 months ago by swbarnes2 14k
0
votes
0
replies
562
views
Answer: Answer: Help interpreting Samtools Flagstat results
3 months ago by swbarnes2 14k
0
votes
0
replies
460
views
Comment: Comment: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
0
votes
1
reply
460
views
Answer: Answer: Running Deseq2 with all samples vs samples for each comparison separately
3 months ago by swbarnes2 14k
0
votes
0
replies
683
views
Comment: Comment: No tumour cells in clustering of tumor sample?!
3 months ago by swbarnes2 14k
0
votes
0
replies
724
views
Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
0
votes
1
reply
724
views
Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by swbarnes2 14k
1
vote
0
replies
324
views
Answer: Answer: Interpretation of output from MiXCR TCR sequencing
3 months ago by swbarnes2 14k
1,999 results • Page 1 of 40
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6