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comments
0
votes
0
replies
315
views
Finding a list of heritable traits using GCTA
complex
heritability
traits
GCTA
23 months ago by
samuelandjw
▴ 260
2
votes
1
reply
552
views
Should we include genotype as covariates when performing EWAS?
methylation
EWAS
DNA
updated 17 months ago by
Ram
44k • written 24 months ago by
samuelandjw
▴ 260
2
votes
1
reply
492
views
What are the general strategies in assessing new differentially methylation positions obtained from EWAS?
methylation
EWAS
DNA
updated 17 months ago by
Ram
44k • written 2.0 years ago by
samuelandjw
▴ 260
4
votes
1
reply
467
views
Is it okay to map reads from WES designed for GRCh37 to GRCh38?
exome
whole
sequencing
updated 2.0 years ago by
Pierre Lindenbaum
161k • written 2.0 years ago by
samuelandjw
▴ 260
0
votes
0
replies
418
views
How to get list of blood-expressed Fantom 5 enhancers?
fantom5
updated 2.0 years ago by
Ram
44k • written 2.0 years ago by
samuelandjw
▴ 260
0
votes
1
reply
763
views
Comment:
Comment: How to access the NCBI Molecular QTL Browser?
2.1 years ago by
samuelandjw
▴ 260
1
vote
3
replies
763
views
How to access the NCBI Molecular QTL Browser?
QTL
updated 2.1 years ago by
GenoMax
142k • written 2.1 years ago by
samuelandjw
▴ 260
0
votes
0
replies
7.8k
views
Comment:
Comment: Any FastQC alternative
2.1 years ago by
samuelandjw
▴ 260
0
votes
0
replies
297
views
How to group EWAS traits like GWAS catalog does?
GWAS
EWAS
2.1 years ago by
samuelandjw
▴ 260
3
votes
1
reply
614
views
reference request: list of DNA methylation sites with consistent methylation levels across individuals in blood
methylation
DNA
updated 2.2 years ago by
Papyrus
★ 2.9k • written 2.2 years ago by
samuelandjw
▴ 260
0
votes
0
replies
991
views
Answer:
Answer: Unable to install dplyr on Fedora 35
2.3 years ago by
samuelandjw
▴ 260
1
vote
1
reply
546
views
EWAS: should DNA methylation level be the independent variable or dependent variable?
DNA
EWAS
methylation
updated 20 months ago by
Peter
• 0 • written 2.4 years ago by
samuelandjw
▴ 260
0
votes
0
replies
1.5k
views
Comment:
Comment: Best practice for running GATK VQSR on X chromosome
2.5 years ago by
samuelandjw
▴ 260
1
vote
1
reply
587
views
Should we trust genotypes called in simple tandem repeat regions?
sequencing
GATK
WGS
WES
updated 2.5 years ago by
Istvan Albert
100k • written 2.5 years ago by
samuelandjw
▴ 260
0
votes
0
replies
688
views
Comment:
Comment: What is the largest freely available dataset of WGS samples?
2.6 years ago by
samuelandjw
▴ 260
3
votes
0
replies
520
views
GATK site filtering: when should I use VQSR or hard filtering?
VQSR
GATK
2.6 years ago by
samuelandjw
▴ 260
1
vote
0
replies
1.6k
views
Answer:
Answer: How to subset vcf by sample and write?
2.8 years ago by
samuelandjw
▴ 260
1
vote
0
replies
717
views
Comment:
Comment: GATK VQSR for human WGS
2.8 years ago by
samuelandjw
▴ 260
0
votes
0
replies
2.2k
views
Comment:
Comment: Error in plot-vcfstats
2.8 years ago by
samuelandjw
▴ 260
2
votes
0
replies
1.4k
views
Comment:
Comment: Using vcftools and got Error: Unknown option: --max-missing
2.8 years ago by
samuelandjw
▴ 260
0
votes
1
reply
6.1k
views
Comment:
Comment: plot-vcfstats
2.8 years ago by
samuelandjw
▴ 260
2
votes
1
reply
6.1k
views
Answer:
Answer: plot-vcfstats
2.8 years ago by
samuelandjw
▴ 260
0
votes
0
replies
1.5k
views
Comment:
Comment: Best practice for running GATK VQSR on X chromosome
2.8 years ago by
samuelandjw
▴ 260
0
votes
4
replies
1.5k
views
Best practice for running GATK VQSR on X chromosome
WGS
GATK
WES
2.5 years ago by
samuelandjw
▴ 260
0
votes
1
reply
2.5k
views
Comment:
Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.8 years ago by
samuelandjw
▴ 260
1
vote
0
replies
2.5k
views
Comment:
Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.8 years ago by
samuelandjw
▴ 260
11
votes
13
replies
2.5k
views
Why is WGS/WES depth of Y chromosome highly variable?
chromosome-Y
whole-genome-sequencing
updated 17 months ago by
Ram
44k • written 2.8 years ago by
samuelandjw
▴ 260
0
votes
1
reply
2.5k
views
Comment:
Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.8 years ago by
samuelandjw
▴ 260
0
votes
0
replies
6.6k
views
Comment:
Comment: GATK genomicsDBimport intervals for WGS
2.9 years ago by
samuelandjw
▴ 260
1
vote
0
replies
2.8k
views
Comment:
Comment: Why is VCFtools excluding invariable sites?
3.1 years ago by
samuelandjw
▴ 260
0
votes
0
replies
6.3k
views
Comment:
Comment: plotting PCA PLINK eigenvec output in R
3.1 years ago by
samuelandjw
▴ 260
3
votes
1
reply
6.3k
views
Answer:
Answer: plotting PCA PLINK eigenvec output in R
3.1 years ago by
samuelandjw
▴ 260
0
votes
0
replies
646
views
Convert spanning deletions called by GATK back to regular indels
GATK
sequencing
3.5 years ago by
samuelandjw
▴ 260
0
votes
0
replies
2.0k
views
Answer:
A: How do I plot RFMix results?
3.6 years ago by
samuelandjw
▴ 260
0
votes
0
replies
8.9k
views
Comment:
C: bwa mem hard clipping
4.5 years ago by
samuelandjw
▴ 260
0
votes
0
replies
23k
views
Comment:
C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
4.5 years ago by
samuelandjw
▴ 260
0
votes
0
replies
1.7k
views
Comment:
C: meaning of Q_bias ADMIXTURE bootstrap
4.7 years ago by
samuelandjw
▴ 260
1
vote
2
replies
1.7k
views
meaning of Q_bias ADMIXTURE bootstrap
admixture
population
ancestry
updated 4.7 years ago by
icrojasb
• 0 • written 5.2 years ago by
samuelandjw
▴ 260
0
votes
1
reply
1.0k
views
refine population phased haplotypes by pedigree
phasing
genotype
pedigree
population
updated 4.8 years ago by
bmstudent
• 0 • written 5.2 years ago by
samuelandjw
▴ 260
4
votes
0
replies
1.8k
views
Answer:
A: ADMIXTURE haploid mode does not converge
5.2 years ago by
samuelandjw
▴ 260
4
votes
1
reply
1.8k
views
ADMIXTURE haploid mode does not converge
admixture
population
updated 17 months ago by
Ram
44k • written 5.2 years ago by
samuelandjw
▴ 260
41 results • Page
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