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Comment: Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
4 weeks ago by cwwong13 ▴ 40
2
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2
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701
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Is MACS3 the same as MACS2?
MACS MACS3 MACS2
updated 4 months ago by 142k • written 4 months ago by ▴ 40
2
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2
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623
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Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 5 months ago by 44k • written 5 months ago by ▴ 40
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1
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767
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Comment: Comment: Tests for the linear and non-linear relationship between two genes
5 months ago by cwwong13 ▴ 40
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767
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Comment: Comment: Tests for the linear and non-linear relationship between two genes
5 months ago by cwwong13 ▴ 40
6
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5
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767
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Tests for the linear and non-linear relationship between two genes
ode drc correlation regression rnaseq
updated 5 months ago by 83k • written 5 months ago by ▴ 40
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2.1k
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Comment: Comment: Technical replicates in Microarray data
6 months ago by cwwong13 ▴ 40
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1
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401
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Testing the interaction term in single-cell RNAseq DEG analysis
DEG scRNAseq Seurat
updated 7 months ago by 83k • written 7 months ago by ▴ 40
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1.3k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
8 months ago by cwwong13 ▴ 40
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0
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1.3k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
8 months ago by cwwong13 ▴ 40
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1
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1.3k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
8 months ago by cwwong13 ▴ 40
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7
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1.3k
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Highly inflated p-values in GWAS by regenie
regenie plink gwas
8 months ago by cwwong13 ▴ 40
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1
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728
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Comment: Comment: Keplen Meyer Curve Dropping to zero
10 months ago by cwwong13 ▴ 40
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0
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906
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
10 months ago by cwwong13 ▴ 40
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2
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906
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
10 months ago by cwwong13 ▴ 40
2
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7
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906
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Should we assume UMI-based scRNAseq data is not compositional?
compositional scRNAseq
10 months ago by cwwong13 ▴ 40
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1
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541
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Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
WGCNA r RNA-seq cluster
updated 10 months ago by 44k • written 10 months ago by ▴ 40
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0
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809
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Comment: Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
14 months ago by cwwong13 ▴ 40
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0
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809
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Comment: Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
14 months ago by cwwong13 ▴ 40
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3
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809
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Summarizing permutation test/ bootstrap result for multiple samples for single-cell RNAseq data
single-cell RNA-seq
14 months ago by cwwong13 ▴ 40
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1
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514
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overlay ggplot graphs like those merging channels in imagej
ggplot imagej
updated 15 months ago by 3.9k • written 15 months ago by ▴ 40
1
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0
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504
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What are the differences between GSVA and ssGSEA (in layman's term)?
ssGSEA GSVA GSEA
15 months ago by cwwong13 ▴ 40
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0
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831
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Comment: Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
15 months ago by cwwong13 ▴ 40
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0
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831
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Comment: Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
15 months ago by cwwong13 ▴ 40
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4
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831
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Do I need to adjust the pvalue if I am only going to test one gene from omics data containing many genes?
pvalue Omics RNAseq
15 months ago by cwwong13 ▴ 40
2
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2
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733
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List of genes that are uniquely found in human (not in mouse)
orthologue genome gene
updated 18 months ago by 44k • written 18 months ago by ▴ 40
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1
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10k
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Comment: Comment: map cDNA position on genomic position
19 months ago by cwwong13 ▴ 40
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1
reply
830
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Is it possible to infer whether a patient is with homozygous with the alternative alleles (at two different location)
association WES variant genome
updated 2.0 years ago by ★ 2.9k • written 2.9 years ago by ▴ 40
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0
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1.1k
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Comment: Comment: Determine sex/ gender of a mouse cell line via sequencing data
2.0 years ago by cwwong13 ▴ 40
2
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3
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1.1k
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Determine sex/ gender of a mouse cell line via sequencing data
sequencing line cell
updated 23 months ago by ▴ 120 • written 2.0 years ago by ▴ 40
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0
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2.2k
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Comment: Comment: The modules are not clustered together after WGCNA
2.1 years ago by cwwong13 ▴ 40
0
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1
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2.2k
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Comment: Comment: The modules are not clustered together after WGCNA
2.1 years ago by cwwong13 ▴ 40
0
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1
reply
2.2k
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Comment: Comment: The modules are not clustered together after WGCNA
2.1 years ago by cwwong13 ▴ 40
0
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1
reply
2.2k
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Comment: Comment: The modules are not clustered together after WGCNA
2.1 years ago by cwwong13 ▴ 40
0
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1
reply
2.2k
views
Comment: Comment: The modules are not clustered together after WGCNA
2.1 years ago by cwwong13 ▴ 40
1
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10
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2.2k
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The modules are not clustered together after WGCNA
cluster WGCNA r dendrograms
2.1 years ago by cwwong13 ▴ 40
2
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1
reply
725
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Ways or packages to analyze single-cell RNAseq data that prepared following Tang's protocol
cell RNAseq seurat single
updated 2.1 years ago by 83k • written 2.1 years ago by ▴ 40
0
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1
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857
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Comment: Comment: What is the current recommended way to process/ analyze Ion Torrent Proton RNAse
2.2 years ago by cwwong13 ▴ 40
1
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3
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857
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What is the current recommended way to process/ analyze Ion Torrent Proton RNAseq data
RNAseq Proton Ion analysis Torrent pipeline processing
updated 2.2 years ago by 100k • written 2.3 years ago by ▴ 40
0
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3
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942
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COVID-19 WGS sequencing for individuals having mRNA vaccination
mRNA COVID vaccine WGS
updated 2.4 years ago by 11k • written 2.4 years ago by ▴ 40
0
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0
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516
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Molecular docking considerations
binding affinity vina biology docking structural ligand
2.6 years ago by cwwong13 ▴ 40
0
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1
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2.1k
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Comment: Comment: Proper way(s) to perform enrichment analysis in R
2.7 years ago by cwwong13 ▴ 40
4
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4
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2.1k
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Proper way(s) to perform enrichment analysis in R
GSEA analysis enrichment R RNAseq
updated 2.7 years ago by ▴ 90 • written 2.7 years ago by ▴ 40
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1
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4.3k
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Comment: Comment: normalization to "housekeeping" genes of RNAseq data vs qPCR result
2.8 years ago by cwwong13 ▴ 40
2
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4
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4.3k
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normalization to "housekeeping" genes of RNAseq data vs qPCR result
qPCR RNAseq
updated 2.8 years ago by 83k • written 2.8 years ago by ▴ 40
0
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1
reply
995
views
Comment: Comment: Assessing how similar/ different of activated pathways between multiple groups o
2.8 years ago by cwwong13 ▴ 40
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3
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995
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Assessing how similar/ different of activated pathways between multiple groups of samples
pathway correlation test hypothesis
updated 2.8 years ago by 4.2k • written 2.8 years ago by ▴ 40
0
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0
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421
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assessing relative contribution of samples/ organs towards a diseases in multi-tissue RNAseq
RNAseq
2.8 years ago by cwwong13 ▴ 40
0
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1
reply
666
views
Association analysis with SNP
association WGS GWAS SNP WES
updated 2.9 years ago by ▴ 1000 • written 2.9 years ago by ▴ 40
0
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0
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710
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Comment: Comment: program/ software to generate large synthetic benchmark gene/ protein interactio
2.9 years ago by cwwong13 ▴ 40
74 results • Page 1 of 2
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