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2
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245
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Obtaining Infinium Methylation450K manifest for hg38
TCGA hg38 methylation Illumina
updated 8 days ago by ★ 1.2k • written 13 days ago by ▴ 120
0
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0
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127
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Get metadat from the ICGC data portal
hg38 ICGC Cancer
11 weeks ago by elisheva ▴ 120
0
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0
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378
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Using DANPOS2 to determine nucleosome positions
MNase-seq DANPOS ENCODE bigwig
15 months ago by elisheva ▴ 120
0
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1
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2.6k
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Comment: Comment: star --readFilesIn error when using unmapped.out.mate1/2 files
20 months ago by elisheva ▴ 120
0
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0
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1.1k
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Comment: Comment: Bedmethyl
2.0 years ago by elisheva ▴ 120
0
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1
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607
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Answer: Answer: how to handle duplicate reads in unpaired Whole Exome Sequence
2.1 years ago by elisheva ▴ 120
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0
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2.8k
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Answer: Answer: make a BED file with exons only
2.1 years ago by elisheva ▴ 120
0
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2
replies
594
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Covid variant sequences
FASTA VCF variants Covid
updated 2.2 years ago by 142k • written 2.2 years ago by ▴ 120
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0
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5.4k
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Comment: Comment: Identifying mutations in an aligment
2.4 years ago by elisheva ▴ 120
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1
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1.1k
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Comment: Comment: ENCODE: Why are there more than one bed narrowPeak file for each DNase-seq exper
3.0 years ago by elisheva ▴ 120
0
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1
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1.1k
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Comment: Comment: ENCODE: Why are there more than one bed narrowPeak file for each DNase-seq exper
3.0 years ago by elisheva ▴ 120
2
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1
reply
1.1k
views
Error with SRA Toolkit prefetch command
timeout sra ncbi https
updated 3.0 years ago by 82k • written 3.0 years ago by ▴ 120
0
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1
reply
1.1k
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Comment: C: Comparison of allele frequencies between population
3.4 years ago by elisheva ▴ 120
0
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1
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1.1k
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Comment: C: Comparison of allele frequencies between population
3.4 years ago by elisheva ▴ 120
4
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5
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1.1k
views
Comparison of allele frequencies between population
SNP vcf 1000 genome project population
updated 3.4 years ago by 10k • written 3.4 years ago by ▴ 120
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0
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11k
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Comment: C: How to download VCF of 1000 genome project with population frequencies?
3.4 years ago by elisheva ▴ 120
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0
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1.4k
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Comment: C: Confusion regarding 7th and 8th column of FANTOM5 Enhancer Coordinates BED File
3.9 years ago by elisheva ▴ 120
0
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1
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1.4k
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Comment: C: Confusion regarding 7th and 8th column of FANTOM5 Enhancer Coordinates BED File
3.9 years ago by elisheva ▴ 120
0
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2
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756
views
Finding enhancers of the whole human body
enhancers fantom5 CAGE-seq
4.0 years ago by elisheva ▴ 120
2
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6
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1.7k
views
Retrive genomic sequences of genes of all ensembl organsims
sequence sequencing ensembl ftp gene
4.2 years ago by elisheva ▴ 120
0
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1
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1.7k
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Comment: C: Retrive gene sequences of all ensembl organsims
4.2 years ago by elisheva ▴ 120
0
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1
reply
1.7k
views
Comment: C: Retrive gene sequences of all ensembl organsims
4.2 years ago by elisheva ▴ 120
2
votes
0
replies
585
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Extract the sequence of retrotransposons sites
genome retrotransposons ucsc
4.2 years ago by elisheva ▴ 120
0
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0
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28k
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Comment: C: What is P value and Padj value in DEGs ?
4.4 years ago by elisheva ▴ 120
0
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0
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994
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Comment: C: HTSeq-count: gene models/transcripts are in FASTA format not gtf/gff
4.4 years ago by elisheva ▴ 120
0
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1
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1.1k
views
Comment: C: Convert regex into DNAString object
4.8 years ago by elisheva ▴ 120
2
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3
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1.1k
views
Convert regex into DNAString object
R bioconductor Biostrings
4.8 years ago by elisheva ▴ 120
2
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18
replies
2.7k
views
Help with finding introns
cDNA genome introns
updated 5.0 years ago by 20 • written 6.9 years ago by ▴ 120
0
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0
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2.0k
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Comment: C: Customising bedtools shuffle command
5.3 years ago by elisheva ▴ 120
5
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10
replies
3.9k
views
Finding exons and introns sequences
genome sequence exon intron ensembl
updated 5.6 years ago by ★ 3.7k • written 5.6 years ago by ▴ 120
0
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0
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3.9k
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Comment: C: Finding exons and introns sequences
5.6 years ago by elisheva ▴ 120
0
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1
reply
3.9k
views
Comment: C: Finding exons and introns sequences
5.6 years ago by elisheva ▴ 120
0
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1
reply
3.9k
views
Comment: C: finding exons and introns sequences
5.6 years ago by elisheva ▴ 120
0
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1
reply
3.9k
views
Comment: C: finding exons and introns sequences
5.6 years ago by elisheva ▴ 120
0
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12
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2.1k
views
bedtools intersect issue
bed bedtools
updated 14 months ago by 44k • written 5.7 years ago by ▴ 120
0
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1
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2.1k
views
Comment: C: bedtools intersect issue
5.7 years ago by elisheva ▴ 120
0
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1
reply
2.1k
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Comment: C: bedtools intersect issue
5.7 years ago by elisheva ▴ 120
0
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1
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2.1k
views
Comment: C: bedtools intersect issue
5.7 years ago by elisheva ▴ 120
0
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1
reply
2.1k
views
Comment: C: bedtools intersect issue
5.7 years ago by elisheva ▴ 120
0
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1
reply
3.3k
views
Comment: C: deepTools plot profile problem
5.9 years ago by elisheva ▴ 120
6
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4
replies
3.3k
views
deepTools plot profile problem
deepTools
updated 13 months ago by 44k • written 5.9 years ago by ▴ 120
0
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1
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1.8k
views
Comment: C: Plotting average profiles
6.0 years ago by elisheva ▴ 120
4
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3
replies
1.8k
views
Plotting average profiles
R Bioconductor
6.0 years ago by elisheva ▴ 120
4
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9
replies
2.3k
views
The efficient way to generate fasta and bed files
python fasta bed
6.1 years ago by elisheva ▴ 120
0
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2
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2.3k
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Comment: C: The efficient way to generate fasta and bed files
6.1 years ago by elisheva ▴ 120
2
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2
replies
4.2k
views
Scatterplot with hexbin
R Plot hexbin
updated 6.4 years ago by 11k • written 6.4 years ago by ▴ 120
1
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2
replies
1.5k
views
Problem with loacting gtf file
gtf ucsc gene
updated 6.5 years ago by 142k • written 6.5 years ago by ▴ 120
0
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1
reply
2.3k
views
Comment: C: Getting 3D model
6.5 years ago by elisheva ▴ 120
0
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1
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2.3k
views
Comment: C: Getting 3D model
6.5 years ago by elisheva ▴ 120
3
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5
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2.3k
views
Getting 3D model
3D Oxaloacetate
updated 6.5 years ago by 88k • written 6.5 years ago by ▴ 120
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