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2
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1
reply
381
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Answer: Answer: How to find what is the most significantly modulated gene in GEO2R analysis?
9 weeks ago by ahmad mousavi ▴ 800
2
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2
replies
389
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Need a spatial transcriptomics cancer data
NGS scRNA-Seq Single-Cell
updated 11 weeks ago by ★ 1.8k • written 11 weeks ago by ▴ 800
0
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1
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447
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Comment: Comment: average of one column for each category of another column
11 weeks ago by ahmad mousavi ▴ 800
0
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1
reply
854
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Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
12 weeks ago by ahmad mousavi ▴ 800
0
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1
reply
603
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
3 months ago by ahmad mousavi ▴ 800
9
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2
replies
513
views
Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq scrna-seq deg deseq2
updated 5 months ago by 4.2k • written 5 months ago by ▴ 800
0
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0
replies
809
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Answer: Answer: STAR ALIGNMENT
5 months ago by ahmad mousavi ▴ 800
0
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0
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854
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Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
5 months ago by ahmad mousavi ▴ 800
0
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1
reply
854
views
Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
5 months ago by ahmad mousavi ▴ 800
2
votes
6
replies
854
views
What are the steps for Germline and Somatic CNV detection using CNVkit?
cnv cnvkit
updated 12 weeks ago by 43k • written 5 months ago by ▴ 800
0
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0
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2.9k
views
Answer: Answer: Can we compare bulk RNAseq samples and single cell rnaseq clusters?
9 months ago by ahmad mousavi ▴ 800
0
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0
replies
481
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Comment: Comment: Estimating sample size from bulk RNAseq data
9 months ago by ahmad mousavi ▴ 800
0
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1
reply
484
views
How to add annotation columns with specific colors to the heatmap?
R heatmap RNA-seq
updated 10 months ago by 43k • written 10 months ago by ▴ 800
0
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1
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1.2k
views
Answer: Answer: Variant identified, What next?
20 months ago by ahmad mousavi ▴ 800
0
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0
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465
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Comment: Comment: Carp mitochondrial genome
20 months ago by ahmad mousavi ▴ 800
1
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0
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738
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Answer: Answer: BEDtools merge output
20 months ago by ahmad mousavi ▴ 800
0
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0
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549
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Answer: Answer: Does it make sense to analyze snRNA-seq data with low nUMI per gene?
20 months ago by ahmad mousavi ▴ 800
1
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0
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2.2k
views
Answer: Answer: scRNA-seq: Which is the best method for computing the % of similarity between tw
20 months ago by ahmad mousavi ▴ 800
1
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1
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2.3k
views
Answer: Answer: Fold change cutoff for downregulated genes
21 months ago by ahmad mousavi ▴ 800
1
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0
replies
1.6k
views
Answer: Answer: Skills for industry career in bioinformatics
21 months ago by ahmad mousavi ▴ 800
0
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1
reply
740
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Answer: Answer: Expected runtimes for GATK variant calling?
21 months ago by ahmad mousavi ▴ 800
2
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0
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944
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Answer: Answer: Bulk RNA-seq with genome but without gene annotation
22 months ago by ahmad mousavi ▴ 800
3
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0
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499
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Answer: Answer: Using gtf file to get gene positions
22 months ago by ahmad mousavi ▴ 800
0
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1
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59k
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Answer: Answer: What Are The Most Common Stupid Mistakes In Bioinformatics?
22 months ago by ahmad mousavi ▴ 800
1
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1
reply
484
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Barcode whitelist in seurat
scRNA ngs scRNA-seq
updated 23 months ago by 21k • written 23 months ago by ▴ 800
0
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0
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743
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Comment: Comment: How to demultiplex single cell rna-seq based on SNP mutation?
23 months ago by ahmad mousavi ▴ 800
1
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0
replies
1.2k
views
Answer: Answer: What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq d
23 months ago by ahmad mousavi ▴ 800
0
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1
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1.3k
views
Comment: Comment: I don't understand the HDF5 file from 10x genomics scRNAseq
23 months ago by ahmad mousavi ▴ 800
0
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2
replies
743
views
How to demultiplex single cell rna-seq based on SNP mutation?
NGS RNA-SEQ singlecell scRNA-seq
23 months ago by ahmad mousavi ▴ 800
16
votes
5
replies
13k
views
6 follow
Tutorial: Easy way to do GO enrichment in R
enrichr RNA-Seq gene R
updated 13 months ago by 43k • written 6.4 years ago by ▴ 800
4
votes
3
replies
5.3k
views
How to compare two Seurat object (sample) in order to find top markers?
scRNA-SEQ NGS rna-seq
updated 2.4 years ago by ▴ 100 • written 2.5 years ago by ▴ 800
0
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0
replies
1.1k
views
Comment: Comment: Finding cluster specific markers in the Seurat object
2.5 years ago by ahmad mousavi ▴ 800
0
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2
replies
1.1k
views
Finding cluster specific markers in the Seurat object
sequencing seurat scRNA scRNA-SEQ
2.5 years ago by ahmad mousavi ▴ 800
0
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1
reply
6.2k
views
Comment: Comment: Which trajectory method is better !?
2.6 years ago by ahmad mousavi ▴ 800
5
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4
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6.2k
views
Which trajectory method is better !?
cell monocle3 monocle scRNA-SEQ single RNA-SEQ
2.6 years ago by ahmad mousavi ▴ 800
0
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0
replies
586
views
How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac scATAC
2.6 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
1.1k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq singlecell seurat scrna
2.9 years ago by ahmad mousavi ▴ 800
0
votes
2
replies
2.1k
views
Comment: Comment: How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
3.0 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
861
views
Rare cell population in single cell ATAC-Seq
atac-seq atac
updated 3.0 years ago by ▴ 110 • written 3.0 years ago by ▴ 800
0
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0
replies
1.2k
views
No peaks found in Signac's FindMarker
seurat atac-seq Signac atac singlecell
3.0 years ago by ahmad mousavi ▴ 800
0
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0
replies
816
views
Answer: A: SNP index definition
3.4 years ago by ahmad mousavi ▴ 800
0
votes
3
replies
2.9k
views
How to handle DNA methylation duplication in Bismark?
sequencing alignment
updated 3.7 years ago by 20 • written 6.3 years ago by ▴ 800
1
vote
5
replies
2.1k
views
How to make annotation (GFF/GTF) for transcriptome?
RNA-Seq Assembly sequencing alignment
updated 3.9 years ago by 8.5k • written 3.9 years ago by ▴ 800
0
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0
replies
1.7k
views
Comment: C: Bacterial RNAseq - Help for beginner
4.0 years ago by ahmad mousavi ▴ 800
0
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2
replies
1.7k
views
Answer: A: Bacterial RNAseq - Help for beginner
4.0 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
483
views
How to make comparison between human and mouse pathways for a gene list?
RNA-Seq
4.0 years ago by ahmad mousavi ▴ 800
20
votes
7
replies
6.4k
views
Tutorial: Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2 RNA-Seq R
updated 13 months ago by 43k • written 5.5 years ago by ▴ 800
0
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0
replies
12k
views
Comment: C: How to make k-means clustering plot for relative expression?
4.0 years ago by ahmad mousavi ▴ 800
0
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0
replies
3.3k
views
Comment: C: How to make GFF file based on assembled transcriptome and genome sequence?
4.1 years ago by ahmad mousavi ▴ 800
0
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1
reply
3.3k
views
Comment: C: How to make GFF file based on assembled transcriptome and genome sequence?
4.1 years ago by ahmad mousavi ▴ 800
113 results • Page 1 of 3
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