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Comment:
Comment: How can I calculate the OS of each patient?
1 day ago by
ATpoint
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247
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Comment:
Comment: Can I perform a correlation test with 3 biological replicates per condition?
1 day ago by
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Answer:
Answer: Can I perform a correlation test with 3 biological replicates per condition?
1 day ago by
ATpoint
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Comment:
Comment: Can I perform a correlation test with 3 biological replicates per condition?
1 day ago by
ATpoint
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654
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Comment:
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
1 day ago by
ATpoint
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272
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Comment:
Comment: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
1 day ago by
ATpoint
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654
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Comment:
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
1 day ago by
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274
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Comment:
Comment: Details on salmon index
1 day ago by
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654
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Answer:
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
1 day ago by
ATpoint
82k
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224
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Comment:
Comment: Getting differential ChIP-seq peaks between conditions after calling consensus p
1 day ago by
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654
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Comment:
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
1 day ago by
ATpoint
82k
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224
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Answer:
Answer: Getting differential ChIP-seq peaks between conditions after calling consensus p
2 days ago by
ATpoint
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260
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Comment:
Comment: RNAseq RNA content
3 days ago by
ATpoint
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389
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Comment:
Comment: Overlapping Ranges within Granges object
3 days ago by
ATpoint
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147
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Comment:
Comment: sci-RNA-seq
3 days ago by
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389
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Answer:
Answer: Overlapping Ranges within Granges object
3 days ago by
ATpoint
82k
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386
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Comment:
Comment: BWA alignment
3 days ago by
ATpoint
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221
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Answer:
Answer: Inquiry about deseq2 transformation
3 days ago by
ATpoint
82k
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172
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Answer:
Answer: The total expressed genes in RNA-Seq data
3 days ago by
ATpoint
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131
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Answer:
Answer: What is the bin size for Bamcompare?
3 days ago by
ATpoint
82k
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386
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Comment:
Comment: BWA alignment
4 days ago by
ATpoint
82k
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190
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Comment:
Comment: Publish a Letter in higher impact vs Research article in lower impact
4 days ago by
ATpoint
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359
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Comment:
Comment: How to remove multiple batch effects from RNA-seq data before limma differential
5 days ago by
ATpoint
82k
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568
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Comment:
Comment: Tissue-specific DEG analysis with DEseq2
5 days ago by
ATpoint
82k
2
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281
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Answer:
Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
6 days ago by
ATpoint
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217
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Answer:
Answer: DESeq2 error
7 days ago by
ATpoint
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219
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Comment:
Comment: When should I use R-MarkDown over R-Script ?
7 days ago by
ATpoint
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231
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Comment:
Comment: LncRNA Nomenclature
7 days ago by
ATpoint
82k
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331
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Answer:
Answer: How to convert normalized BigWig file to count matrix?
8 days ago by
ATpoint
82k
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409
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Comment:
Comment: Importing a fastq file
8 days ago by
ATpoint
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490
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Comment:
Comment: RNA seq analysis
9 days ago by
ATpoint
82k
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224
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Answer:
Answer: How do I change the title font size in ViolinPlot (Seurat)
9 days ago by
ATpoint
82k
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216
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Comment:
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing
9 days ago by
ATpoint
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329
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Comment:
Comment: A question about reference genome for creating the consensus sequence
9 days ago by
ATpoint
82k
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329
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Answer:
Answer: A question about reference genome for creating the consensus sequence
9 days ago by
ATpoint
82k
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190
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Comment:
Comment: Repeated testing/data mining in RNA Seq
10 days ago by
ATpoint
82k
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228
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Comment:
Comment: Differentail gene expression results
10 days ago by
ATpoint
82k
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174
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Comment:
Comment: student
10 days ago by
ATpoint
82k
0
votes
0
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184
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Answer:
Answer: What is the proper way to identify the cell types of scRNAseq cluster?
10 days ago by
ATpoint
82k
1
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0
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248
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Comment:
Comment: error in R code
11 days ago by
ATpoint
82k
1
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568
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Answer:
Answer: Tissue-specific DEG analysis with DEseq2
11 days ago by
ATpoint
82k
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0
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351
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Answer:
Answer: install.packages("imudata")
11 days ago by
ATpoint
82k
0
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1
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275
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Comment:
Comment: creating batch colum for batch correction
13 days ago by
ATpoint
82k
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1
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478
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Comment:
Comment: Differential Expression Analysis using DESeq2 in R
14 days ago by
ATpoint
82k
1
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342
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Comment:
Comment: Generating mpileup file using samtools
14 days ago by
ATpoint
82k
2
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268
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Answer:
Answer: Analysis of intronic reads included scRNA-seq data
14 days ago by
ATpoint
82k
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0
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376
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Comment:
Comment: What analysis suitable to identify similarly expressed genes between two samples
14 days ago by
ATpoint
82k
1
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203
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Answer:
Answer: DSEQ2 analysis
14 days ago by
ATpoint
82k
0
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0
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314
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Comment:
Comment: Does comparing two different groups to a common third group introduce bias in th
14 days ago by
ATpoint
82k
2
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0
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341
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Comment:
Comment: Problem with data downloaded from Short Reads Archive (SRA)
15 days ago by
ATpoint
82k
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