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Comment: Comment: Differential Expression Analysis using DESeq2 in R
2 hours ago by ATpoint 82k
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152
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Comment: Comment: Generating mpileup file using samtools
5 hours ago by ATpoint 82k
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97
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Answer: Answer: Analysis of intronic reads included scRNA-seq data
5 hours ago by ATpoint 82k
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237
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Comment: Comment: What analysis suitable to identify similarly expressed genes between two samples
6 hours ago by ATpoint 82k
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67
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Answer: Answer: DSEQ2 analysis
6 hours ago by ATpoint 82k
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0
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166
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Comment: Comment: Does comparing two different groups to a common third group introduce bias in th
8 hours ago by ATpoint 82k
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0
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217
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Comment: Comment: Problem with data downloaded from Short Reads Archive (SRA)
1 day ago by ATpoint 82k
2
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1
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237
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Answer: Answer: What analysis suitable to identify similarly expressed genes between two samples
1 day ago by ATpoint 82k
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1
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217
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Comment: Comment: Problem with data downloaded from Short Reads Archive (SRA)
1 day ago by ATpoint 82k
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0
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206
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Comment: Comment: Odd alignment question/finding
1 day ago by ATpoint 82k
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0
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283
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Comment: Comment: DESeq2 processing problems
1 day ago by ATpoint 82k
2
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1
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187
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Answer: Answer: MA plot of shrunken fold change
3 days ago by ATpoint 82k
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372
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Answer: Answer: High Malat-1 expression in single cell data
4 days ago by ATpoint 82k
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154
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Comment: Comment: Longitudinal analysis of subpopulations: which approach is better?
4 days ago by ATpoint 82k
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299
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Comment: Comment: How to assign cell types after integration in scRNA
4 days ago by ATpoint 82k
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1
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292
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Answer: Answer: ChIP-seq datasets: input samples omitted?
4 days ago by ATpoint 82k
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1
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299
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Comment: Comment: How to assign cell types after integration in scRNA
5 days ago by ATpoint 82k
2
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1
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1.9k
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Comment: Comment: NGS forensics: how to know if data is fabricated
5 days ago by ATpoint 82k
2
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0
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361
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Answer: Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
6 days ago by ATpoint 82k
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0
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377
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Comment: Comment: PCA plot
7 days ago by ATpoint 82k
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3.7k
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Comment: Comment: Treatment VS Control in Single Cell RNAseq analysis
7 days ago by ATpoint 82k
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0
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228
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Comment: Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
7 days ago by ATpoint 82k
2
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0
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304
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Answer: Answer: Sequence read length shorter than flow cell specification
8 days ago by ATpoint 82k
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1
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301
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Comment: Comment: Highest variable features in single cell data
8 days ago by ATpoint 82k
2
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0
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498
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Comment: Comment: To get p-values for the TPM
9 days ago by ATpoint 82k
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1
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346
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Comment: Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
10 days ago by ATpoint 82k
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1
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349
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Comment: Comment: Should I remove unlocalized scaffols in reference genome before alignment?
10 days ago by ATpoint 82k
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287
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Answer: Answer: Gene set enrichment analysis differences between 2020 and 2024
10 days ago by ATpoint 82k
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0
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137
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Comment: Comment: Displaced fragment length distribution in ATAC-seq
11 days ago by ATpoint 82k
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1
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303
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Comment: Comment: Per base sequence content error in RNAseq analysis
11 days ago by ATpoint 82k
1
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1
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346
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Answer: Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
11 days ago by ATpoint 82k
0
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1
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303
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Answer: Answer: Per base sequence content error in RNAseq analysis
11 days ago by ATpoint 82k
0
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0
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576
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Answer: Answer: how to find genes that are significantly expressed in brain cortex samples
12 days ago by ATpoint 82k
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0
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1.5k
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Comment: Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
13 days ago by ATpoint 82k
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0
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1.3k
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Comment: Comment: Cellranger count error: Input FASTQ file ended prematurely
13 days ago by ATpoint 82k
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0
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304
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Comment: Comment: Could you please assist in identifying this cluster?
14 days ago by ATpoint 82k
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0
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5.3k
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Comment: Comment: Memory usage of picard Samsort
14 days ago by ATpoint 82k
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0
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294
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Answer: Answer: DEseq2
15 days ago by ATpoint 82k
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0
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506
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Comment: Comment: Integration of transcriptomics and proteomics: difficult matching names
16 days ago by ATpoint 82k
2
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0
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317
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Comment: Comment: Bwa sampe - BGI
17 days ago by ATpoint 82k
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0
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382
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Comment: Comment: Ensembl gene id conversion
17 days ago by ATpoint 82k
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1
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397
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Answer: Answer: Which experiments generate Position Frequency Matrix?
17 days ago by ATpoint 82k
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1
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282
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Comment: Comment: Statistical Advice Needed for RNAseq Data Analysis
17 days ago by ATpoint 82k
1
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1
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295
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
17 days ago by ATpoint 82k
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0
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233
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Comment: Comment: Error in edgeR/Deseq2 Analysis
17 days ago by ATpoint 82k
2
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1
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407
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Answer: Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
17 days ago by ATpoint 82k
3
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2
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349
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Answer: Answer: I'm new to cell ranger. Can single cells prepared with a protocol other than the
17 days ago by ATpoint 82k
1
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0
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415
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Comment: Comment: Deseq2 : Paired analysis or otherwise
18 days ago by ATpoint 82k
0
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1
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23k
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Comment: Comment: Gene Set Enrichment Analysis
19 days ago by ATpoint 82k
1
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1
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415
views
Answer: Answer: Deseq2 : Paired analysis or otherwise
19 days ago by ATpoint 82k
9,683 results • Page 1 of 194
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