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12
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10
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How To Use Maf Files In The Absolute Software
maf tcga copynumber mutation somatic
updated 3.3 years ago by • 0 • written 10.2 years ago by ▴ 640
0
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1
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6.1k
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Comment: C: Pindel Somatic Calls?
updated 4.3 years ago by 43k • written 9.4 years ago by ▴ 640
0
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1
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6.1k
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Comment: C: Pindel Somatic Calls?
updated 4.3 years ago by 43k • written 9.4 years ago by ▴ 640
2
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2
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6.1k
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Comment: A: Pindel Somatic Calls?
updated 4.3 years ago by 43k • written 9.9 years ago by ▴ 640
1
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1
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3.0k
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Answer: A: Seeking tool for identifying hybridization probes in gDNA -- more like Southern
updated 4.3 years ago by 43k • written 9.9 years ago by ▴ 640
1
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0
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3.5k
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Comment: C: Breakdancer Max Kahan Error:0
updated 4.4 years ago by 43k • written 10.0 years ago by ▴ 640
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0
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8.0k
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Comment: A: GATK-Depth of Coverage - Issue with per gene coverage
updated 4.4 years ago by 43k • written 10.0 years ago by ▴ 640
0
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0
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2.5k
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Comment: C: Pindel Segmentation Fault Error
updated 4.4 years ago by 43k • written 10.0 years ago by ▴ 640
2
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1
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20k
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Answer: A: How to read .bam file in Rsamtools R package?
updated 4.4 years ago by 43k • written 10.1 years ago by ▴ 640
0
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1
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9.1k
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Comment: C: Minimum requirements for a laptop for RNA-seq
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 640
4
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0
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8.4k
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Answer: A: how to quickly extract sequence from genome positions
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 640
2
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0
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26k
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Comment: C: The New Grch38 Human Genome Browser Has Arrived!
updated 4.5 years ago by 43k • written 8.7 years ago by ▴ 640
0
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0
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11k
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Comment: C: Capping coverage in bam file
updated 4.5 years ago by 43k • written 8.7 years ago by ▴ 640
0
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0
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11k
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Comment: C: Capping coverage in bam file
updated 4.5 years ago by 43k • written 8.7 years ago by ▴ 640
4
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1
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6.1k
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Answer: A: Pindel Somatic Calls?
updated 4.9 years ago by 87k • written 10.1 years ago by ▴ 640
0
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2
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6.1k
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Answer: A: Obtaining bam files from ICGC or TCGC
8.1 years ago by Danielk ▴ 640
0
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1
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7.0k
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Comment: C: htslib C API: getting reads from region
8.3 years ago by Danielk ▴ 640
0
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0
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5.9k
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Comment: C: Merge VCF files using bcftools merge
8.5 years ago by Danielk ▴ 640
0
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1
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9.8k
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Comment: C: Finding the iIllumina index read from raw fastq file
8.6 years ago by Danielk ▴ 640
4
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1
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9.8k
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Answer: Answer: Finding the iIllumina index read from raw fastq file
updated 20 months ago by 43k • written 8.6 years ago by ▴ 640
1
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0
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4.8k
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Comment: Comment: BICseq R package problem
updated 19 months ago by 43k • written 8.7 years ago by ▴ 640
0
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0
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2.4k
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Comment: Comment: Meaning of abbreviations of last-follow-up status in the 2000 breast cancer data
updated 19 months ago by 43k • written 8.7 years ago by ▴ 640
25
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16
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11k
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Capping coverage in bam file
downsample bam coverage
updated 18 months ago by 43k • written 8.7 years ago by ▴ 640
1
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1
reply
11k
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Comment: Comment: Capping coverage in bam file
updated 18 months ago by 43k • written 8.7 years ago by ▴ 640
0
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1
reply
11k
views
Comment: C: Capping coverage in bam file
8.7 years ago by Danielk ▴ 640
0
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0
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4.1k
views
Comment: Comment: picardmetrics: Run Picard tools and collate the outputs into one file.
updated 16 months ago by 43k • written 8.9 years ago by ▴ 640
0
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1
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2.5k
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Answer: Answer: Convert Indel format in vcf
updated 16 months ago by 43k • written 8.9 years ago by ▴ 640
1
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0
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4.8k
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Comment: Comment: VCF to MAF conversion for ABSOLUTE
updated 16 months ago by 43k • written 8.9 years ago by ▴ 640
0
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1
reply
4.8k
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Comment: Comment: VCF to MAF conversion for ABSOLUTE
updated 16 months ago by 43k • written 8.9 years ago by ▴ 640
1
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1
reply
7.1k
views
Comment: C: transpose rows and columns
updated 3.1 years ago by 43k • written 9.1 years ago by ▴ 640
1
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1
reply
2.5k
views
Answer: Answer: 200 vs 400 bp Ion Torrent
updated 22 months ago by 43k • written 9.1 years ago by ▴ 640
3
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0
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12k
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Answer: Answer: Preferred Tools For Making Analysis Pipeline Flowchart ?
updated 23 months ago by 43k • written 9.1 years ago by ▴ 640
0
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0
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20k
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Comment: Comment: Bioinformatics "Cheat Sheet"
updated 23 months ago by 43k • written 9.1 years ago by ▴ 640
3
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1
reply
4.8k
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Comment: Comment: Integrating HTSeq count data of different samples
updated 23 months ago by 43k • written 9.1 years ago by ▴ 640
0
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0
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1.9k
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Comment: Comment: quantifying ribosomal content in Illumina libraries
updated 2.1 years ago by 43k • written 9.2 years ago by ▴ 640
0
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1
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1.9k
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Comment: Comment: quantifying ribosomal content in Illumina libraries
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 640
0
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1
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6.7k
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Answer: Answer: How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequ
updated 24 months ago by 43k • written 9.2 years ago by ▴ 640
1
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1
reply
1.9k
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Answer: Answer: quantifying ribosomal content in Illumina libraries
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 640
0
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0
replies
5.7k
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Comment: Comment: PopGenome...ReadVCF. Cannot open the file. Why?
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 640
0
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0
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6.1k
views
Comment: Comment: Pindel Somatic Calls?
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 640
0
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0
replies
5.1k
views
Answer: Answer: Ryan Poplin of GATK uses this
updated 2.3 years ago by 43k • written 9.4 years ago by ▴ 640
1
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1
reply
2.7k
views
Comment: Comment: Negative score in TCGA pancancer gene expression data
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 640
1
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0
replies
9.3k
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Comment: Comment: Principles of Tidy Data (Hadley Wickham) and the VCF format
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 640
0
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1
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9.3k
views
Comment: Comment: Principles of Tidy Data (Hadley Wickham) and the VCF format
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 640
0
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1
reply
2.3k
views
BamUtil for Base Qual Recalibration
recalibration recal bqsr basequal gatk
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 640
7
votes
4
replies
3.6k
views
Abra for indel realignment
realignment abra gatk
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 640
0
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1
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2.3k
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Comment: Comment: How to get coverage ratio?
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 640
1
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1
reply
2.3k
views
Answer: Answer: How to get coverage ratio?
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 640
0
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0
replies
4.7k
views
Comment: Comment: "Copy Number Variation" detection in Tumor only sample
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 640
0
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1
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2.7k
views
Comment: Comment: Pindel Segmentation Fault During Sorting and Outputting Tandem Duplications
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 640
72 results • Page 1 of 2
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