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5
votes
2
replies
657
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 12 months ago by 82k • written 12 months ago by ★ 1.8k
8
votes
5
replies
2.3k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 12 months ago by 142k • written 2.9 years ago by ★ 1.8k
1
vote
1
reply
479
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment plotColData scater
12 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
0
replies
479
views
Answer: Answer: Can I add labels to (some) cells in a plotColData from scater?
12 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
392
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage deepTools
updated 11 months ago by 43k • written 13 months ago by ★ 1.8k
0
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1
reply
3.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
3.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
3.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
2
replies
3.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
3.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
10
votes
17
replies
3.3k
views
How do one analyze data from SMART-Seq stranded kit (v4)?
single-cell smart-seq
updated 14 months ago by ★ 6.0k • written 14 months ago by ★ 1.8k
0
votes
0
replies
3.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
2
replies
3.3k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
419
views
bamComparing ChIp-Seq samples with strange coverage between chipped and Input
normalization bamCompare deepTools
updated 11 months ago by 43k • written 15 months ago by ★ 1.8k
3
votes
4
replies
2.7k
views
STAR aligner can't map too short reads
ribo-seq star
updated 16 months ago by 19k • written 16 months ago by ★ 1.8k
1
vote
1
reply
945
views
Comment: Comment: How to calculate the offset for a riboseq experiment
17 months ago by Assa Yeroslaviz ★ 1.8k
4
votes
3
replies
945
views
How to calculate the offset for a riboseq experiment
sequencing p-site riboseq offset
updated 17 months ago by ▴ 360 • written 17 months ago by ★ 1.8k
0
votes
0
replies
1.3k
views
Comment: Comment: How to interpret the nine-square plot from mageckFlute
17 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
1.3k
views
Comment: Comment: How to interpret the nine-square plot from mageckFlute
17 months ago by Assa Yeroslaviz ★ 1.8k
5
votes
4
replies
1.3k
views
How to interpret the nine-square plot from mageckFlute
mageck mageckFlute squareView scatterplot
17 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
841
views
Comment: Comment: Need help understanding GEO data structure
18 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
841
views
Comment: Comment: Need help understanding GEO data structure
18 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
5
replies
841
views
Need help understanding GEO data structure
Run-Selector GEO gene-expression-omnibus
updated 18 months ago by 142k • written 18 months ago by ★ 1.8k
4
votes
2
replies
601
views
How to extract min and max values of a gene from different columns
group_by tibble tidyverse
updated 18 months ago by 14k • written 18 months ago by ★ 1.8k
0
votes
0
replies
563
views
Comment: Comment: expanding a table by duplicating rows of a specific pattern
19 months ago by Assa Yeroslaviz ★ 1.8k
3
votes
2
replies
563
views
expanding a table by duplicating rows of a specific pattern
tidyyverse dplyr R data.frame
19 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
4.0k
views
Comment: Comment: Dealing with nanopore fast5 files compressed with vbz
20 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
632
views
Comment: Comment: Identifying binding sequences of a specific protein to its target
21 months ago by Assa Yeroslaviz ★ 1.8k
2
votes
3
replies
632
views
Identifying binding sequences of a specific protein to its target
transcription-factor-binding-site gene-regulation transcription-factor
21 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
715
views
Comment: Comment: Ca you help me understand the Nanopore fastqc results?
2.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
2
replies
715
views
Ca you help me understand the Nanopore fastqc results?
pycoQC long-read-seq nanopore fastqc
2.0 years ago by Assa Yeroslaviz ★ 1.8k
8
votes
7
replies
2.8k
views
Help me understand the Nanopore fastqc results
long-read-seq nanopore fastqc
updated 2.0 years ago by 100k • written 2.0 years ago by ★ 1.8k
0
votes
1
reply
2.8k
views
Comment: Comment: Help me understand the Nanopore fastqc results
2.0 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
2.8k
views
Comment: Comment: Help me understand the Nanopore fastqc results
2.0 years ago by Assa Yeroslaviz ★ 1.8k
15
votes
11
replies
8.8k
views
6 follow
filter out fasta File by pattern
pattern fasta awk sed regexp
updated 2.0 years ago by 21k • written 9.2 years ago by ★ 1.8k
0
votes
0
replies
347
views
pQTL analysis
plink GWAS pQTL linkage-disequilibrium
2.2 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
421
views
Understanding DEXSeq results
dexseq normalization counts
2.3 years ago by Assa Yeroslaviz ★ 1.8k
3
votes
1
reply
508
views
Basic understanding of Hi-C and interacion (contact-) maps
TADs interactions contact-maps AB-compartments HiC
updated 2.3 years ago by 82k • written 2.3 years ago by ★ 1.8k
1
vote
1
reply
794
views
Hoe do you do differential Splicing using edgeR command diffSpliceDGE?
differential-splicing edger diffSpliceDGE
updated 2.3 years ago by ▴ 120 • written 2.3 years ago by ★ 1.8k
1
vote
1
reply
1.5k
views
Comment: Comment: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
2.5 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
5.2k
views
Comment: Comment: How do I compare reads between two bam file?
2.6 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
5.2k
views
Comment: Comment: How do I compare reads between two bam file?
2.6 years ago by Assa Yeroslaviz ★ 1.8k
5
votes
5
replies
5.2k
views
How do I compare reads between two bam file?
samtools reads bam compare
updated 2.6 years ago by 161k • written 2.6 years ago by ★ 1.8k
0
votes
0
replies
11k
views
Comment: Comment: How Find Genes On Specific Positions
2.6 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
2.3k
views
Comment: Comment: DESeq2 model matrix not full rank
2.9 years ago by Assa Yeroslaviz ★ 1.8k
1
vote
0
replies
1.7k
views
Comment: Comment: DESeq2 comparison two cell types and two genotypes
3.0 years ago by Assa Yeroslaviz ★ 1.8k
2
votes
1
reply
1.7k
views
Comment: Comment: Failing to run tblastn
3.1 years ago by Assa Yeroslaviz ★ 1.8k
4
votes
4
replies
1.7k
views
Answer: Answer: Failing to run tblastn
3.1 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
1.7k
views
Comment: Comment: Failing to run tblastn
3.1 years ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
1.7k
views
Comment: Comment: Failing to run tblastn
3.1 years ago by Assa Yeroslaviz ★ 1.8k
570 results • Page 2 of 12
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