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0
votes
0
replies
385
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Comment:
Comment: why renaming Idents in Seurat object doesn't work?
3 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
3
replies
385
views
why renaming Idents in Seurat object doesn't work?
Seurat
RenameIdents
R
3 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
385
views
Answer:
Answer: why renaming Idents in Seurat object doesn't work?
updated 8 days ago by
Ram
43k • written 8 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
564
views
Comment:
Comment: Can index hopping lead to more reads in samples?
28 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
564
views
Comment:
Comment: Can index hopping lead to more reads in samples?
28 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
564
views
Comment:
Comment: Can index hopping lead to more reads in samples?
28 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
564
views
Comment:
Comment: Can index hopping lead to more reads in samples?
28 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
564
views
Comment:
Comment: Can index hopping lead to more reads in samples?
28 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
9
replies
564
views
Can index hopping lead to more reads in samples?
index-hopping
NovoSeq
illumina
NGS
Seqeucning
28 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
255
views
What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r
pathway
go-enrichment
gage
4 weeks ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
290
views
Comment:
Comment: annotating single-cell clusters from gene lists
9 weeks ago by
Assa Yeroslaviz
★ 1.8k
0
votes
2
replies
290
views
annotating single-cell clusters from gene lists
annotation
FindAllMarkers
Seurat
cell-type
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
140
views
Correlating Chip-Seq and proteimics results
chip-seq
correlations
proteomics
3 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
195
views
Understanding Homer output for makeTagDirectory
chip-seq
peaks
homer
makeTagDirectory
3 months ago by
Assa Yeroslaviz
★ 1.8k
3
votes
4
replies
574
views
split sequences into their codons in a table
R
fasta
codon-table
3 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
0
replies
574
views
Answer:
Answer: split sequences into their codons in a table
3 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
160
views
cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation
peak
chip-seq
phantompeak
ChIPseeker
3 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
285
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures
chipseq
chipseeker
annoDB
TxDb
updated 3 months ago by
rpolicastro
13k • written 3 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
8
replies
1.5k
views
counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count
cellranger
cite-seq
scRNA-seq
updated 4 months ago by
ATpoint
82k • written 9 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
249
views
extracting Uniprot IDs for Kegg pathways
mapping
uniprot
R
kegg
clusterprofiler
5 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
597
views
Comment:
Comment: Plotting gene Expression per pathway
6 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
597
views
Comment:
Comment: Plotting gene Expression per pathway
6 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
4
replies
597
views
Plotting gene Expression per pathway
GO-enrichment
gene-expression
R
ggplot
RNA-seq
6 months ago by
Assa Yeroslaviz
★ 1.8k
3
votes
6
replies
867
views
summarize consecutive columns over a data frame
tidyverse
r
offtopic
updated 7 months ago by
Ram
43k • written 7 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
867
views
Comment:
Comment: summarize consecutive columns over a data frame
7 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
3
replies
813
views
trajectory-like graph for a data frame
trajectory
rna-seq
tidyverse
r
velocity
updated 7 months ago by
jared.andrews07
★ 16k • written 7 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
813
views
Comment:
Comment: trajectory-like graph for a data frame
7 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
1.5k
views
Comment:
Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
1.5k
views
Comment:
Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
598
views
Comment:
Comment: WGS sequencing data based proteomics analysis
9 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
4
replies
598
views
WGS sequencing data based proteomics analysis
workflow
UniProt
proteomics
WGS
RNA-Seq
updated 9 months ago by
biofalconch
★ 1.1k • written 9 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
6.6k
views
Comment:
Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
6.6k
views
Comment:
Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
6.6k
views
Answer:
Answer: scRNA-seq CITE-seq-count bioinformatics
9 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
405
views
Comment:
Comment: Checking significance in trend of time-series analysis for count data
10 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
2
replies
405
views
Checking significance in trend of time-series analysis for count data
glm
RNA-Seq
time-series
10 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
868
views
Comment:
Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
10 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
868
views
Comment:
Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
10 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
5
replies
868
views
annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR
celldex
cell-type-annotations
scRNA
updated 10 months ago by
Nitin Narwade
★ 1.6k • written 10 months ago by
Assa Yeroslaviz
★ 1.8k
2
votes
2
replies
898
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment
scDblFinder
SMART-Seq
updated 5 months ago by
e.r.zakiev
▴ 210 • written 10 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
1.2k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat
single-cell
FindVariableFeatures
FindAllMarkers
RNA-Seq
updated 11 months ago by
rpolicastro
13k • written 11 months ago by
Assa Yeroslaviz
★ 1.8k
5
votes
2
replies
638
views
ERCC normalization within DESeq2
normalization
ERCC
size.factors
DESeq2
updated 12 months ago by
ATpoint
82k • written 12 months ago by
Assa Yeroslaviz
★ 1.8k
8
votes
5
replies
2.3k
views
DESeq2 model matrix not full rank
full-rank
model-matrix
deseq2
updated 12 months ago by
GenoMax
142k • written 2.9 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
471
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment
plotColData
scater
12 months ago by
Assa Yeroslaviz
★ 1.8k
1
vote
0
replies
471
views
Answer:
Answer: Can I add labels to (some) cells in a plotColData from scater?
12 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
386
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage
deepTools
updated 10 months ago by
Ram
43k • written 13 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
3.2k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
3.2k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
3.2k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by
Assa Yeroslaviz
★ 1.8k
0
votes
2
replies
3.2k
views
Comment:
Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by
Assa Yeroslaviz
★ 1.8k
561 results • Page
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