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194
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Tools for network alignement
graph network R netcom igraph
updated 3 months ago by 43k • written 3 months ago by ▴ 510
1
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1
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515
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Network cross-validation
wgcna RNASeq Network CV
updated 11 months ago by 3.9k • written 11 months ago by ▴ 510
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1
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842
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Comment: Comment: Log fold change from rlog
18 months ago by Arindam Ghosh ▴ 510
3
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3
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842
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Log fold change from rlog
logarithms R deseq
updated 18 months ago by 82k • written 18 months ago by ▴ 510
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2.4k
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Answer: Answer: From Bismark to methylkit, which file is better to use?
2.7 years ago by Arindam Ghosh ▴ 510
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1
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3.7k
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Comment: Comment: Difference in Bismark output methylation call files and coverage files
2.7 years ago by Arindam Ghosh ▴ 510
1
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1
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959
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RRBS data analysis using Bismark and methylkit
RRBS methylkit Bismark WGBS
updated 2.6 years ago by ★ 2.9k • written 2.7 years ago by ▴ 510
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3.5k
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Comment: Comment: Bismark rrbs data analysis
2.7 years ago by Arindam Ghosh ▴ 510
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1
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2.7k
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Comment: Comment: directionality of RRBS
2.8 years ago by Arindam Ghosh ▴ 510
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1
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4.2k
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Comment: Comment: GC content in bilsulfite converted library
2.8 years ago by Arindam Ghosh ▴ 510
1
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1
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5.1k
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Comment: Comment: Rrbs Is It Different From Bisulfite Seq
2.8 years ago by Arindam Ghosh ▴ 510
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1
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813
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Comment: Comment: Contigs and scaffold in reference genome
2.8 years ago by Arindam Ghosh ▴ 510
2
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3
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813
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Contigs and scaffold in reference genome
BWA Ensembl Genome Reference HiSat NCBI
updated 2.8 years ago by 142k • written 2.8 years ago by ▴ 510
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1
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18k
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Comment: Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
2.8 years ago by Arindam Ghosh ▴ 510
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0
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5.0k
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Comment: Comment: How can I get .bed file that have unique Entrez gene id (or symbol) for deeptool
2.8 years ago by Arindam Ghosh ▴ 510
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0
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694
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Read trimming in BS-Seq
Methylation BS-Seq Bismark WGBS
2.9 years ago by Arindam Ghosh ▴ 510
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0
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1.4k
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Bismark to MethylKit
methylkit bismark bsseq
3.0 years ago by Arindam Ghosh ▴ 510
1
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1
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973
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Pathway network
Reactome Pathway cytoscape KEGG igraph
updated 3.0 years ago by 27k • written 3.0 years ago by ▴ 510
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0
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3.6k
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Comment: Comment: What is the difference between deferentially expressed genes and deferentially
3.0 years ago by Arindam Ghosh ▴ 510
0
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0
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458
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Is there a limit on the number of query in cir_query()?
R SMILES webchem
3.0 years ago by Arindam Ghosh ▴ 510
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0
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5.5k
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Comment: Comment: Multiple Hits and Unique Mapped Reads
3.1 years ago by Arindam Ghosh ▴ 510
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0
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5.6k
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Comment: C: Open Targets and programmatic access
3.1 years ago by Arindam Ghosh ▴ 510
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0
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2.0k
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HiSat2 vs BowTie2 for mapping miRNA-seq reads
miRNA-Seq Hisat2 Bowtie
updated 3.4 years ago by 20 • written 3.8 years ago by ▴ 510
57
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22
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29k
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7 follow
Batch correction in DESeq2
Combat DESeq2 Batch-Effect
updated 28 days ago by 43k • written 4.6 years ago by ▴ 510
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0
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2.6k
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Comment: C: miRNAs interaction networks analysis
3.7 years ago by Arindam Ghosh ▴ 510
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1
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23k
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Comment: C: htseq-counts output merge into one matrix ??
3.7 years ago by Arindam Ghosh ▴ 510
0
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1
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5.8k
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Comment: C: How to find p-value of the modules in WGCNA?
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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5.8k
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Comment: C: How to find p-value of the modules in WGCNA?
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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5.8k
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Comment: C: How to find p-value of the modules in WGCNA?
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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10k
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Comment: C: featureCounts for paired bam files and dealing with multimapping reads?
3.8 years ago by Arindam Ghosh ▴ 510
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0
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2.7k
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Comment: C: Full GTF file vs Subset GTF file
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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2.7k
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Comment: C: Full GTF file vs Subset GTF file
3.8 years ago by Arindam Ghosh ▴ 510
0
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0
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2.7k
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Comment: C: Full GTF file vs Subset GTF file
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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2.7k
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Comment: C: Full GTF file vs Subset GTF file
3.8 years ago by Arindam Ghosh ▴ 510
2
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8
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2.7k
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Full GTF file vs Subset GTF file
featurecounts RNA-Seq miRNA-seq Ensembl
updated 3.8 years ago by ▴ 520 • written 3.8 years ago by ▴ 510
1
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0
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1.1k
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Answer: A: DESeq2 for Differential gene expression
3.8 years ago by Arindam Ghosh ▴ 510
0
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0
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2.8k
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Comment: C: LncRNA Differential Expression and Analysis of lncRNA and mRNA co-expression.
3.8 years ago by Arindam Ghosh ▴ 510
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0
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3.6k
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Answer: A: FastQC & trimming - RNA seq data
3.8 years ago by Arindam Ghosh ▴ 510
0
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0
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5.8k
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Comment: C: GO and KEGG from DESeq2 counts
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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1.8k
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Comment: C: Error in reading expression matrix
3.8 years ago by Arindam Ghosh ▴ 510
0
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2
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1.5k
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Comment: C: hisat2 mm10 low transcriptome mapping rate and low uniquely mapping rate
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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1.5k
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Answer: A: hisat2 mm10 low transcriptome mapping rate and low uniquely mapping rate
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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10.0k
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Comment: C: GTF/GFF for non-coding RNA
3.8 years ago by Arindam Ghosh ▴ 510
6
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1
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29k
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Comment: C: Batch correction in DESeq2
3.8 years ago by Arindam Ghosh ▴ 510
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0
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3.2k
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Comment: C: miRNA-seq Trimmomatic adapter file
3.8 years ago by Arindam Ghosh ▴ 510
0
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0
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4.8k
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Comment: C: microRNA- sequencing analysis
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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7.4k
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Comment: C: miRNA differential expression
3.8 years ago by Arindam Ghosh ▴ 510
0
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1
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7.4k
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Comment: C: miRNA differential expression
3.8 years ago by Arindam Ghosh ▴ 510
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0
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1.3k
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Comment: C: Annotation for miRNA-seq data analysis
3.8 years ago by Arindam Ghosh ▴ 510
2
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2
replies
1.3k
views
Annotation for miRNA-seq data analysis
mirna hisat ensembl RNA-Seq Assembly
updated 3.9 years ago by ▴ 330 • written 3.9 years ago by ▴ 510
222 results • Page 1 of 5
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