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689
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Answer: Answer: Detecting NUMTS (nuclear mitochondrial sequences) in the whole genome sequenced
2.7 years ago by d-cameron ★ 2.9k
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4.2k
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Comment: Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite
2.7 years ago by d-cameron ★ 2.9k
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1.8k
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Comment: Comment: Issue with samtools reheader, bam file
2.8 years ago by d-cameron ★ 2.9k
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1.2k
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Answer: Answer: Many TLENs in a SAM file seem much too big
2.8 years ago by d-cameron ★ 2.9k
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0
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847
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Comment: Comment: adding a contig fasta to reference genome fasta
2.8 years ago by d-cameron ★ 2.9k
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1.8k
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Comment: Comment: Issue with samtools reheader, bam file
2.8 years ago by d-cameron ★ 2.9k
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1
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1.8k
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Answer: Answer: Issue with samtools reheader, bam file
2.8 years ago by d-cameron ★ 2.9k
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0
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3.1k
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Comment: Comment: BAM File, Change chromosome notation
2.8 years ago by d-cameron ★ 2.9k
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0
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3.1k
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Answer: Answer: BAM File, Change chromosome notation
2.8 years ago by d-cameron ★ 2.9k
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0
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5.3k
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Comment: Comment: BWA MEM Definition of a Primary Alignment
3.0 years ago by d-cameron ★ 2.9k
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1
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10k
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Comment: Comment: samtools multithreads
3.1 years ago by d-cameron ★ 2.9k
2
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1.1k
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Answer: A: Soft Clipped read 3' end position
3.4 years ago by d-cameron ★ 2.9k
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0
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1.2k
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Answer: A: bwa aln writing speed became very slow after being very fast. What is the patter
3.5 years ago by d-cameron ★ 2.9k
1
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0
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1.1k
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Answer: A: Tools to call Large indels/structural variations in whole genome BAM data of mo
3.5 years ago by d-cameron ★ 2.9k
1
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0
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1.8k
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Comment: C: Revert bam to fastq
3.6 years ago by d-cameron ★ 2.9k
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1
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1.1k
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Comment: A: what the mean of Genomic content
3.6 years ago by d-cameron ★ 2.9k
1
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1
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809
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Answer: A: Is it possible to compute the Loss of heterocigosity from the Copy number variat
3.6 years ago by d-cameron ★ 2.9k
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0
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1.6k
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Answer: A: WES or WGS
3.7 years ago by d-cameron ★ 2.9k
2
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1
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1.1k
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Answer: A: Structural Variation data of ICGC/PCAWG: 2,658 cancers across 38 tumour types
3.7 years ago by d-cameron ★ 2.9k
0
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0
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2.7k
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Answer: A: How to Update/Edit INFO field of VCF
updated 3.7 years ago by 43k • written 3.7 years ago by ★ 2.9k
2
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1
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2.8k
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Answer: A: Is there a hybrid aligner that uses both long and short reads to align to a refe
3.7 years ago by d-cameron ★ 2.9k
0
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0
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668
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Are bwa alt contigs controlled purely by idxbase.alt?
bwa
3.7 years ago by d-cameron ★ 2.9k
1
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1
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1.0k
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Answer: A: diffrent between CNV and pcr duplicate
3.7 years ago by d-cameron ★ 2.9k
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0
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970
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Comment: C: HPV EBV typing from cancer genome data
3.8 years ago by d-cameron ★ 2.9k
3
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0
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12k
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Answer: A: How to interpret variant allele frequency?
3.8 years ago by d-cameron ★ 2.9k
2
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1
reply
970
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Answer: A: HPV EBV typing from cancer genome data
3.8 years ago by d-cameron ★ 2.9k
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0
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2.1k
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Comment: C: how to output the best alignment rather than multiple alignments for each read i
4.0 years ago by d-cameron ★ 2.9k
0
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0
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1.6k
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Comment: C: Why Samtools view don't extract sequence out of the given region?
4.1 years ago by d-cameron ★ 2.9k
1
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0
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985
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Answer: A: Is structure variations detected in DNA panel sequencing should also be detected
4.1 years ago by d-cameron ★ 2.9k
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0
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1.4k
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Answer: A: The center in scatter plot generated by CNVkit looks off
4.1 years ago by d-cameron ★ 2.9k
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0
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1.4k
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Comment: C: The center in scatter plot generated by CNVkit looks off
4.1 years ago by d-cameron ★ 2.9k
0
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0
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846
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Answer: A: [IGV] Is it an aneuploidy ?
4.1 years ago by d-cameron ★ 2.9k
0
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1
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1.4k
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Comment: C: The center in scatter plot generated by CNVkit looks off
4.1 years ago by d-cameron ★ 2.9k
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0
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2.2k
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Answer: A: Split bam into chunks but keep reads mapped to the same region together
4.1 years ago by d-cameron ★ 2.9k
0
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1
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1.4k
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Comment: C: The center in scatter plot generated by CNVkit looks off
4.1 years ago by d-cameron ★ 2.9k
0
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0
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1.5k
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Answer: A: What's the best way to serve VCF data on web?
4.1 years ago by d-cameron ★ 2.9k
0
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0
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946
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Comment: C: Extract SV indicating pair-end reads
4.1 years ago by d-cameron ★ 2.9k
0
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0
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946
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Comment: C: Extract SV indicating pair-end reads
4.1 years ago by d-cameron ★ 2.9k
1
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1
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946
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Answer: A: Extract SV indicating pair-end reads
4.1 years ago by d-cameron ★ 2.9k
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0
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2.2k
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Comment: C: fusion detection for DNA Sequencing data
4.1 years ago by d-cameron ★ 2.9k
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0
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2.2k
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Answer: A: fusion detection for DNA Sequencing data
4.1 years ago by d-cameron ★ 2.9k
0
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1
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6.0k
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Comment: C: bwa mem memory allocation, threads and nodes
4.3 years ago by d-cameron ★ 2.9k
2
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0
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6.0k
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Answer: A: bwa mem memory allocation, threads and nodes
4.3 years ago by d-cameron ★ 2.9k
3
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1
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1.5k
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Answer: A: Approach to structural variation analysis - case vs control
4.6 years ago by d-cameron ★ 2.9k
0
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0
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1.3k
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Answer: A: value of TLEN not conforming to the SAM specifications
4.6 years ago by d-cameron ★ 2.9k
0
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1
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1.7k
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Comment: C: Number of Tandem and Interspersed duplications
4.6 years ago by d-cameron ★ 2.9k
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1
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1.7k
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Comment: C: Number of Tandem and Interspersed duplications
4.7 years ago by d-cameron ★ 2.9k
0
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1
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1.7k
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Answer: A: Number of Tandem and Interspersed duplications
4.7 years ago by d-cameron ★ 2.9k
5
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8
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2.9k
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Are there NGS-based CNV callers that utilise allele frequency?
CNV
updated 4.7 years ago by 20 • written 7.0 years ago by ★ 2.9k
0
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0
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2.5k
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Comment: C: identifying transgene insertion site in WGS
4.8 years ago by d-cameron ★ 2.9k
325 results • Page 2 of 7
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