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Comment:
Comment: Deep Sequencing vs Shallow Sequencing but repeated several times
10 weeks ago by
d-cameron
★ 2.9k
0
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1
reply
323
views
Answer:
Answer: I want to add a human gene sequence to a mouse reference genome
3 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
778
views
Comment:
Comment: How to whole genome assemble when I have three references
4 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
778
views
Comment:
Comment: How to whole genome assemble when I have three references
4 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
778
views
Comment:
Comment: How to whole genome assemble when I have three references
4 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
778
views
Comment:
Comment: How to whole genome assemble when I have three references
4 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
490
views
Answer:
Answer: How to find positions with higher depth relative to their surroundings
7 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
912
views
Answer:
Answer: Importance of Data Structures for Bioinformatics?
7 months ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.6k
views
Answer:
Answer: Converting custom VCF to standard VCF
7 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
699
views
Answer:
Answer: CNV benchmarking
8 months ago by
d-cameron
★ 2.9k
3
votes
1
reply
4.2k
views
Answer:
Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
10 months ago by
d-cameron
★ 2.9k
3
votes
0
replies
441
views
Answer:
Answer: unmapped reads
11 months ago by
d-cameron
★ 2.9k
2
votes
1
reply
1.2k
views
Answer:
Answer: samtools index: Numerical result out of range for both .bai and .csi
17 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.6k
views
Comment:
Comment: paired end mapping with one end being unique and the other end multiple
18 months ago by
d-cameron
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0
votes
1
reply
1.7k
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Comment:
Comment: Unaligned Reads From Bowtie2
19 months ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.7k
views
Answer:
Answer: Unaligned Reads From Bowtie2
19 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: Extracting only soft/hard clipped reads from a bam file
19 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.4k
views
Answer:
Answer: Extracting only soft/hard clipped reads from a bam file
19 months ago by
d-cameron
★ 2.9k
3
votes
0
replies
1.3k
views
Answer:
Answer: VCF to human friendly form?
19 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
670
views
Answer:
Answer: Sampling short reads from a library with long reads
20 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
933
views
Comment:
Comment: SV with identical start and end positions
20 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
933
views
Answer:
Answer: SV with identical start and end positions
20 months ago by
d-cameron
★ 2.9k
0
votes
2
replies
933
views
Comment:
Comment: SV with identical start and end positions
20 months ago by
d-cameron
★ 2.9k
5
votes
0
replies
747
views
Answer:
Answer: PC for bioinformatics
20 months ago by
d-cameron
★ 2.9k
1
vote
1
reply
834
views
Answer:
Answer: Distinguishing records for reads in a pair in a SAM file
20 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
2.1k
views
Comment:
Comment: AF = 0.5 in chrX, VCF of a male
20 months ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.4k
views
Answer:
Answer: Circos plot from SV data of WES samples
20 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
2.6k
views
Comment:
Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.1k
views
Answer:
Answer: How to extract fasta subsequences from a multiline fasta file which has very lon
22 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
637
views
Answer:
Answer: What are the biggest sets of individual-level sequence-based variant data?
22 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
803
views
Answer:
Answer: Is it possible to infer whether a patient is with homozygous with the alternativ
23 months ago by
d-cameron
★ 2.9k
2
votes
1
reply
749
views
Answer:
Answer: Unreasonable allele frequency (AF) found in my sample VCF file
23 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
419
views
Comment:
Comment: How to bin how many alignments a read maps
23 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.5k
views
Answer:
Answer: computing chromothripsis on cancer genomes
23 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
440
views
Comment:
Comment: Detect a sequence without assembling... and counting number of reads?
23 months ago by
d-cameron
★ 2.9k
3
votes
2
replies
1.6k
views
Comment:
Comment: paired end mapping with one end being unique and the other end multiple
24 months ago by
d-cameron
★ 2.9k
2
votes
0
replies
1.6k
views
Comment:
Comment: paired end mapping with one end being unique and the other end multiple
24 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
748
views
Comment:
Comment: Calling variants after using different read alignment programs
2.1 years ago by
d-cameron
★ 2.9k
2
votes
1
reply
748
views
Answer:
Answer: Calling variants after using different read alignment programs
2.1 years ago by
d-cameron
★ 2.9k
0
votes
0
replies
613
views
Answer:
Answer: Tumor phylogeny: WGS or deep WES?
2.1 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
2.0k
views
Comment:
Comment: Are not all duplicated reads removed when applying removal duplicated algorithms
2.1 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
2.0k
views
Answer:
Answer: Are not all duplicated reads removed when applying removal duplicated algorithms
2.1 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
602
views
Answer:
Answer: New VCF Header (schema) Parser---Please Break!!!
2.1 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
1.0k
views
Answer:
Answer: QUAL in VCF file
2.1 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
832
views
Answer:
Answer: Identifying breakpoints of split reads in SAM files
2.1 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
4.5k
views
Comment:
Comment: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.1 years ago by
d-cameron
★ 2.9k
5
votes
2
replies
4.5k
views
Answer:
Answer: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.2 years ago by
d-cameron
★ 2.9k
4
votes
1
reply
1.1k
views
What aren't hg19-hg38 liftOver chains symmetrical?
hg38
hg19
liftover
updated 2.4 years ago by
cathalormond
▴ 30 • written 2.4 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
905
views
Answer:
Answer: BAM - number of mapping positions per read
2.4 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
1.2k
views
Answer:
Answer: which software is the best to look at clinic structural variation in whole genom
2.6 years ago by
d-cameron
★ 2.9k
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