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Answer: Answer: I want to add a human gene sequence to a mouse reference genome
4 months ago by d-cameron ★ 2.9k
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500
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Answer: Answer: How to find positions with higher depth relative to their surroundings
7 months ago by d-cameron ★ 2.9k
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950
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Answer: Answer: Importance of Data Structures for Bioinformatics?
7 months ago by d-cameron ★ 2.9k
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1.6k
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Answer: Answer: Converting custom VCF to standard VCF
8 months ago by d-cameron ★ 2.9k
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0
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720
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Answer: Answer: CNV benchmarking
8 months ago by d-cameron ★ 2.9k
3
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1
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4.2k
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Answer: Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
11 months ago by d-cameron ★ 2.9k
3
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450
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Answer: Answer: unmapped reads
12 months ago by d-cameron ★ 2.9k
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1.2k
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Answer: Answer: samtools index: Numerical result out of range for both .bai and .csi
17 months ago by d-cameron ★ 2.9k
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1.7k
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Answer: Answer: Unaligned Reads From Bowtie2
19 months ago by d-cameron ★ 2.9k
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1
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1.5k
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Answer: Answer: Extracting only soft/hard clipped reads from a bam file
19 months ago by d-cameron ★ 2.9k
3
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1.3k
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Answer: Answer: VCF to human friendly form?
20 months ago by d-cameron ★ 2.9k
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1
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681
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Answer: Answer: Sampling short reads from a library with long reads
20 months ago by d-cameron ★ 2.9k
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954
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Answer: Answer: SV with identical start and end positions
20 months ago by d-cameron ★ 2.9k
5
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762
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Answer: Answer: PC for bioinformatics
21 months ago by d-cameron ★ 2.9k
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846
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Answer: Answer: Distinguishing records for reads in a pair in a SAM file
21 months ago by d-cameron ★ 2.9k
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1.4k
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Answer: Answer: Circos plot from SV data of WES samples
21 months ago by d-cameron ★ 2.9k
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1.1k
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Answer: Answer: How to extract fasta subsequences from a multiline fasta file which has very lon
23 months ago by d-cameron ★ 2.9k
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647
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Answer: Answer: What are the biggest sets of individual-level sequence-based variant data?
23 months ago by d-cameron ★ 2.9k
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0
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814
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Answer: Answer: Is it possible to infer whether a patient is with homozygous with the alternativ
23 months ago by d-cameron ★ 2.9k
2
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1
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762
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Answer: Answer: Unreasonable allele frequency (AF) found in my sample VCF file
23 months ago by d-cameron ★ 2.9k
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0
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1.5k
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Answer: Answer: computing chromothripsis on cancer genomes
24 months ago by d-cameron ★ 2.9k
2
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1
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775
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Answer: Answer: Calling variants after using different read alignment programs
2.1 years ago by d-cameron ★ 2.9k
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0
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622
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Answer: Answer: Tumor phylogeny: WGS or deep WES?
2.1 years ago by d-cameron ★ 2.9k
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1
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2.1k
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Answer: Answer: Are not all duplicated reads removed when applying removal duplicated algorithms
2.2 years ago by d-cameron ★ 2.9k
1
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0
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609
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Answer: Answer: New VCF Header (schema) Parser---Please Break!!!
2.2 years ago by d-cameron ★ 2.9k
2
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0
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1.1k
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Answer: Answer: QUAL in VCF file
2.2 years ago by d-cameron ★ 2.9k
1
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0
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850
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Answer: Answer: Identifying breakpoints of split reads in SAM files
2.2 years ago by d-cameron ★ 2.9k
5
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2
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4.6k
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Answer: Answer: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.2 years ago by d-cameron ★ 2.9k
1
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1
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918
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Answer: Answer: BAM - number of mapping positions per read
2.5 years ago by d-cameron ★ 2.9k
2
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0
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1.2k
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Answer: Answer: which software is the best to look at clinic structural variation in whole genom
2.6 years ago by d-cameron ★ 2.9k
0
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0
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690
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Answer: Answer: Detecting NUMTS (nuclear mitochondrial sequences) in the whole genome sequenced
2.7 years ago by d-cameron ★ 2.9k
1
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0
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1.2k
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Answer: Answer: Many TLENs in a SAM file seem much too big
2.8 years ago by d-cameron ★ 2.9k
0
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1
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1.8k
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Answer: Answer: Issue with samtools reheader, bam file
2.8 years ago by d-cameron ★ 2.9k
0
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0
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3.1k
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Answer: Answer: BAM File, Change chromosome notation
2.8 years ago by d-cameron ★ 2.9k
2
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0
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1.1k
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Answer: A: Soft Clipped read 3' end position
3.4 years ago by d-cameron ★ 2.9k
0
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0
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1.2k
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Answer: A: bwa aln writing speed became very slow after being very fast. What is the patter
3.5 years ago by d-cameron ★ 2.9k
1
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0
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1.1k
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Answer: A: Tools to call Large indels/structural variations in whole genome BAM data of mo
3.5 years ago by d-cameron ★ 2.9k
1
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1
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809
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Answer: A: Is it possible to compute the Loss of heterocigosity from the Copy number variat
3.6 years ago by d-cameron ★ 2.9k
0
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0
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1.6k
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Answer: A: WES or WGS
3.7 years ago by d-cameron ★ 2.9k
2
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1
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1.1k
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Answer: A: Structural Variation data of ICGC/PCAWG: 2,658 cancers across 38 tumour types
3.7 years ago by d-cameron ★ 2.9k
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0
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2.7k
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Answer: A: How to Update/Edit INFO field of VCF
updated 3.7 years ago by 43k • written 3.7 years ago by ★ 2.9k
2
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1
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2.8k
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Answer: A: Is there a hybrid aligner that uses both long and short reads to align to a refe
3.7 years ago by d-cameron ★ 2.9k
1
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1
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1.0k
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Answer: A: diffrent between CNV and pcr duplicate
3.7 years ago by d-cameron ★ 2.9k
3
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0
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12k
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Answer: A: How to interpret variant allele frequency?
3.8 years ago by d-cameron ★ 2.9k
2
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1
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970
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Answer: A: HPV EBV typing from cancer genome data
3.8 years ago by d-cameron ★ 2.9k
1
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0
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985
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Answer: A: Is structure variations detected in DNA panel sequencing should also be detected
4.1 years ago by d-cameron ★ 2.9k
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0
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1.4k
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Answer: A: The center in scatter plot generated by CNVkit looks off
4.1 years ago by d-cameron ★ 2.9k
0
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0
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846
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Answer: A: [IGV] Is it an aneuploidy ?
4.1 years ago by d-cameron ★ 2.9k
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0
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2.2k
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Answer: A: Split bam into chunks but keep reads mapped to the same region together
4.1 years ago by d-cameron ★ 2.9k
0
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0
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1.5k
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Answer: A: What's the best way to serve VCF data on web?
4.1 years ago by d-cameron ★ 2.9k
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